View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_23 (Length: 396)
Name: NF19951_high_23
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 218 - 386
Target Start/End: Complemental strand, 36652897 - 36652718
Alignment:
| Q |
218 |
ctttttcacggtaatattattgcaacaatgttagtaagtatagttagatacgaaatatatgtagaaatgaataacc-----------tccaaaactgcag |
306 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36652897 |
ctttgtcacggtaatattattgcaacaatgttagtaagtatagttagatacgaaatatatgtagaaatgaataaccaaatatggtgttccaaaactgcag |
36652798 |
T |
|
| Q |
307 |
aatagtcccacatcgtagagttagatgtgaaaaataacatctgtaagaacaaggtaacactactttgttttctccttcat |
386 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36652797 |
aattgtcccacatcgtagagttagatgcgaaaaataacatctgtaagaacaaggtaacactactttgttttctccttcat |
36652718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 39643243 - 39643354
Alignment:
| Q |
19 |
gttgttagttggactttaagtttggcctttagtcttaagcccattaggattaccatccttcctata--tagtgtctttgacacactatccaaaggaatga |
116 |
Q |
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|||| ||||||| | ||||||| || |||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||| ||| | |
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| T |
39643243 |
gttgctagttgggccttaagttaggtctttagtcttaagcccattagggttactatccttcctatatttagtgtttttgacacactatccaaataaatca |
39643342 |
T |
|
| Q |
117 |
aatgaatcaaaa |
128 |
Q |
| |
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|||||||||||| |
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|
| T |
39643343 |
aatgaatcaaaa |
39643354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 39643589 - 39643478
Alignment:
| Q |
19 |
gttgttagttggactttaagtttggcctttagtcttaagcccattaggattaccatccttcctatata--gtgtctttgacacactatccaaaggaatga |
116 |
Q |
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|||| ||||||| | |||| || || ||||||||||||| | |||| | |||| ||| |||||||||| ||||||||||||||||||||||| ||| | |
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| T |
39643589 |
gttgctagttgggccttaaattaggtctttagtcttaagtctattaaggttactatctttcctatatatagtgtctttgacacactatccaaataaatta |
39643490 |
T |
|
| Q |
117 |
aatgaatcaaaa |
128 |
Q |
| |
|
|||||||||||| |
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|
| T |
39643489 |
aatgaatcaaaa |
39643478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 14101256 - 14101284
Alignment:
| Q |
81 |
tatatagtgtctttgacacactatccaaa |
109 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
14101256 |
tatatagtgtctttgacacactatccaaa |
14101284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 3223056 - 3222945
Alignment:
| Q |
19 |
gttgttagttggactttaagtttggcctttagtcttaagcccattaggattaccatccttccta--tatagtgtctttgacacactatccaaaggaatga |
116 |
Q |
| |
|
|||| ||||||| | ||||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
3223056 |
gttgctagttgggccttaagttaggtctttagtcttaagcccattagggttaccatccttcctatatatagtgtctttgacacactatccaaatcaatga |
3222957 |
T |
|
| Q |
117 |
aatgaatcaaaa |
128 |
Q |
| |
|
|||||||||||| |
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|
| T |
3222956 |
aatgaatcaaaa |
3222945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 26542401 - 26542354
Alignment:
| Q |
81 |
tatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26542401 |
tatatagtgtctttgacacactatccaaatcaatgaaatgaatcaaaa |
26542354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 34144537 - 34144649
Alignment:
| Q |
19 |
gttgttagttggactttaagtttggcctttagtcttaag-cccattaggattaccatccttcctata--tagtgtctttgacacactatccaaaggaatg |
115 |
Q |
| |
|
|||| ||||||| | ||||||| || |||||||||| || ||||||||| |||| ||| ||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
34144537 |
gttgctagttgggccttaagttaggtctttagtctttaggcccattagggttactatcattcttatatatagtgtctttgacacaccatccaaaggaatg |
34144636 |
T |
|
| Q |
116 |
aaatgaatcaaaa |
128 |
Q |
| |
|
||||||||||||| |
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|
| T |
34144637 |
aaatgaatcaaaa |
34144649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 3270695 - 3270780
Alignment:
| Q |
20 |
ttgttagttggactttaagtttggcctttagtcttaagcccattaggattaccatccttcc--tatatagtgtctttgacacacta |
103 |
Q |
| |
|
||||||||||| | ||| ||| || |||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||| |
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| T |
3270695 |
ttgttagttgggccttatgttaggtctttagtcttaagcccattagggttactatccttcctatatataatgtctttgacacacta |
3270780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 1774634 - 1774587
Alignment:
| Q |
81 |
tatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa |
128 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
1774634 |
tatatagtgtgtttgacacactattcaaaggaatcaaatgaatcaaaa |
1774587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 21045824 - 21045929
Alignment:
| Q |
26 |
gttggactttaagtttggcctttagtcttaag-cccattaggattaccatccttcctatata--gtgtctttgacacactatccaaaggaatgaaatgaa |
122 |
Q |
| |
|
||||||| ||||||| || || ||||||| || ||||||||| |||| ||| |||||||||| |||| |||||||||||||||||| ||| ||||||| |
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| T |
21045824 |
gttggaccttaagttaggtctgtagtctttaggcccattagggttacgatcattcctatatatagtgtttttgacacactatccaaatcaataaaatgaa |
21045923 |
T |
|
| Q |
123 |
tcaaaa |
128 |
Q |
| |
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|||||| |
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|
| T |
21045924 |
tcaaaa |
21045929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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