View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_24 (Length: 387)
Name: NF19951_high_24
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 3 - 360
Target Start/End: Complemental strand, 48880961 - 48880604
Alignment:
| Q |
3 |
gaagaatatcgttccatgtttttgggtacacgacctcggaaatccaaagggttgttgtctgcttccaagagcgatcgttatgctattcgtgataacgatg |
102 |
Q |
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| T |
48880961 |
gaagaatatcgttccatgtttttgggtacacgacctcggaaatccaaagggttgttgtctgcttccaagagtgatcgttatgctattcgtgataacgatg |
48880862 |
T |
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| Q |
103 |
aattgccagagcacgttgattggagggagaaaggtgctgtcaatcccgtcaaagatcaaggccaatgtggtgagttttctctctttcttttttctataat |
202 |
Q |
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| T |
48880861 |
aattgccagagcacgttgattggagggagaaaggtgctgtcaatcccgtcaaagatcaaggccaatgtggtgagttttttctctttcttttttctataat |
48880762 |
T |
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| Q |
203 |
ttgatgaattgaatttagtgaattaaattgattatagcttaacaagaatcctaaacttttgccttcacaattgattatttattttagtttgttctgcaat |
302 |
Q |
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| T |
48880761 |
ttgatgaattgaatttagtgaattaaattgattatagcttaacaagaatcctaaacttttgccttcacaattgattatttattttagtttgttctgcaat |
48880662 |
T |
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| Q |
303 |
ttatatttcaattcacttttaaatattcaacagacttacaccatagaaccaaacatat |
360 |
Q |
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| T |
48880661 |
ttatatttcaattcacttttaaatattcaacagacttacaccatagaaccaaacatat |
48880604 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 34312551 - 34312495
Alignment:
| Q |
117 |
gttgattggagggagaaaggtgctgtcaatcccgtcaaagatcaaggccaatgtggt |
173 |
Q |
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| T |
34312551 |
gttgattggagaaagaaaggtgctgtcactgatgtcaaggatcaaggccaatgtggt |
34312495 |
T |
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