View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_30 (Length: 339)
Name: NF19951_high_30
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 47523971 - 47524261
Alignment:
| Q |
1 |
caaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaaggatgctatagaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47523971 |
caaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgaggatgctatagaca |
47524070 |
T |
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| Q |
101 |
cgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacactatcatgtgcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47524071 |
cgtggacaaaagcgtttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacactatcatgtgcca |
47524170 |
T |
|
| Q |
201 |
taaatccctgaatagacctatatggccttgtattgcttgatggtagttatattacgacagtcataaaaatgtttatgatggtatagtttct |
291 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
47524171 |
taaatccctgaatagacctgtatggccttgtattgcttgatggtagttatattacgacagtcataaaaatgtctttgatggtatagtttct |
47524261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 47529343 - 47529636
Alignment:
| Q |
1 |
caaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaaggatgctatagaca |
100 |
Q |
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|||||||||||||||||||||||| | || ||||||||||| ||||| ||||||||||| | |||| ||||||||||||| ||| ||||||||||||||| |
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| T |
47529343 |
caaggaatgtgtcgtttgttgatggatgaacttgagaaacaattgactcgcttaggagtagaaagcatggttttgcattcatccgaggatgctatagaca |
47529442 |
T |
|
| Q |
101 |
cgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacactatcatgtgcct |
200 |
Q |
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| T |
47529443 |
catggacaaaatcttttggttttgagaggatgacaggtaaagacaagcgtcaatttgttgatattactttcttagaatttcaggacactgtcatgtgcct |
47529542 |
T |
|
| Q |
201 |
taaatccctgaatagacctatatggccttgtattgcttgatggtagttata---ttacgacagtcataaaaatgtttatgatggtatagtttct |
291 |
Q |
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|||| | ||||| | ||||| |||||||| | ||| || ||||||||| ||| |||||||||||||||||||||||| ||||| ||||| |
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| T |
47529543 |
taaaccactgaagaaacctaaatggccttacactgcgtggctgtagttatagttttatgacagtcataaaaatgtttatgattgtataatttct |
47529636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 47551020 - 47551222
Alignment:
| Q |
1 |
caaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaaggatgctatagaca |
100 |
Q |
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|||||||||||| ||||||||||| | | ||||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47551020 |
caaggaatgtgttgtttgttgatgaaggggcttgaggaacaattgattaacttaggagttgggagcttggttttgcattcctccaaggatgctatagaca |
47551119 |
T |
|
| Q |
101 |
cgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacactatcatgtgcct |
200 |
Q |
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| |||| |||| | ||| ||||| | ||| || ||| |||||||| |||||||| || |||||||||| ||||||||| ||||||||||||| || |
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| T |
47551120 |
cttggaaaaaatcatttcattttgttgagatgacgaatgaagacaagtgtaaatttgttcattatactttctttgaatttcaggacactatcatgtgtct |
47551219 |
T |
|
| Q |
201 |
taa |
203 |
Q |
| |
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||| |
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| T |
47551220 |
taa |
47551222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 44870453 - 44870171
Alignment:
| Q |
3 |
aggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaaggatgctatagacacg |
102 |
Q |
| |
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|||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| || | ||||||||| |||| |
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| T |
44870453 |
aggaatgtgtcgtttgttgatggatgagcttgaggaacagttgactcgcttaggagtaggaagattggttttgcattcatctgaagatgctataaacact |
44870354 |
T |
|
| Q |
103 |
tggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacactatcatgtgcctta |
202 |
Q |
| |
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||||||||| ||||||||||||||||||| || | ||| |||||||| || || ||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
44870353 |
tggacaaaatcgtttggttttgctaggatgacgagtgaagacaagtgtaaacttattgataatactttcttagaatttcacaactctatcatgtgcctta |
44870254 |
T |
|
| Q |
203 |
aatccctgaatagacctatatggccttgtattgcttgatggtagttatattacgacagtcataaaaatgtttatgatggtata |
285 |
Q |
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|| | ||||||| ||||||||||||| | ||||||||||| || || || | ||||||||||| ||||||| | |||||||| |
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| T |
44870253 |
aaccactgaatatacctatatggcctcgcattgcttgatgataattgtaccatgacagtcataataatgttttttatggtata |
44870171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9819608 - 9819367
Alignment:
| Q |
1 |
caaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaaggatgctatagaca |
100 |
Q |
| |
|
||||||||||||| |||||||||| | ||| ||||||||||||| || ||||||||||||| | || || |||||||||| |||||||||| ||| |
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| T |
9819608 |
caaggaatgtgtcatttgttgatggatgagattgagaaacagttaactcgcttaggagttgagaaattacttctgcattcctcagaggatgctatgaaca |
9819509 |
T |
|
| Q |
101 |
cgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacactatcatgtgcct |
200 |
Q |
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| ||||||| | | ||||||||||| ||||| || | || | |||||||| ||| ||||| ||||||| |||||||||||||| | || |||||| || |
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| T |
9819508 |
cttggacaagatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtct |
9819409 |
T |
|
| Q |
201 |
taaatccctgaatagacctatatggccttgtattgcttgatg |
242 |
Q |
| |
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||| | ||||| | ||||| ||||||||| ||||||||||| |
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| T |
9819408 |
caaagcactgaaaacacctaaatggccttgcattgcttgatg |
9819367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 9854372 - 9854613
Alignment:
| Q |
1 |
caaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaaggatgctatagaca |
100 |
Q |
| |
|
|||||||| |||| |||||||||| | ||| ||||||||||||| || ||||||||||||| | || || |||||||||| |||||||||| ||| |
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| T |
9854372 |
caaggaatctgtcatttgttgatggatgagattgagaaacagttaactcgcttaggagttgagaaattacttctgcattcctcagaggatgctatgaaca |
9854471 |
T |
|
| Q |
101 |
cgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacactatcatgtgcct |
200 |
Q |
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||||||||| | ||||||||||| ||||| || | || | |||||||| ||| ||||| ||||||| |||||||||||||| | || |||||| || |
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| T |
9854472 |
tttggacaaaatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtct |
9854571 |
T |
|
| Q |
201 |
taaatccctgaatagacctatatggccttgtattgcttgatg |
242 |
Q |
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||| | ||||| | |||||||||| |||| ||||||||||| |
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| T |
9854572 |
caaagcactgaaaacacctatatggtcttgcattgcttgatg |
9854613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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