View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_high_31 (Length: 322)

Name: NF19951_high_31
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_high_31
NF19951_high_31
[»] chr2 (6 HSPs)
chr2 (5-304)||(33170742-33171039)
chr2 (5-80)||(19051551-19051627)
chr2 (5-136)||(36098776-36098908)
chr2 (5-136)||(5849109-5849241)
chr2 (5-90)||(15745613-15745699)
chr2 (5-101)||(18579563-18579660)
[»] chr3 (6 HSPs)
chr3 (5-136)||(52585636-52585768)
chr3 (5-101)||(53581262-53581359)
chr3 (5-90)||(8726858-8726944)
chr3 (5-90)||(9078745-9078831)
chr3 (55-91)||(39453114-39453150)
chr3 (5-90)||(4136367-4136451)
[»] chr7 (7 HSPs)
chr7 (5-101)||(22911149-22911246)
chr7 (5-101)||(23040101-23040198)
chr7 (5-101)||(48859418-48859515)
chr7 (5-136)||(26754854-26754986)
chr7 (5-83)||(23586170-23586249)
chr7 (5-101)||(13596894-13596991)
chr7 (9-93)||(15026339-15026424)
[»] chr6 (2 HSPs)
chr6 (5-101)||(15610085-15610182)
chr6 (5-101)||(5827549-5827646)
[»] chr4 (2 HSPs)
chr4 (5-101)||(48026143-48026240)
chr4 (55-101)||(18570375-18570421)
[»] chr8 (6 HSPs)
chr8 (5-136)||(10260405-10260537)
chr8 (5-101)||(17834423-17834520)
chr8 (5-101)||(9604996-9605093)
chr8 (38-123)||(8871879-8871964)
chr8 (5-101)||(8783536-8783633)
chr8 (177-217)||(33821271-33821311)
[»] chr1 (5 HSPs)
chr1 (5-136)||(44022164-44022296)
chr1 (5-101)||(42132013-42132110)
chr1 (55-136)||(32924078-32924159)
chr1 (5-81)||(43896415-43896492)
chr1 (5-81)||(30939668-30939745)
[»] scaffold0913 (1 HSPs)
scaffold0913 (5-166)||(3519-3682)
[»] scaffold0898 (1 HSPs)
scaffold0898 (5-166)||(1919-2082)
[»] chr5 (4 HSPs)
chr5 (5-101)||(20174537-20174634)
chr5 (5-101)||(17237483-17237580)
chr5 (5-101)||(32295903-32296000)
chr5 (176-212)||(20174733-20174769)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 304
Target Start/End: Complemental strand, 33171039 - 33170742
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttggatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttctt 104  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33171039 ttttcatctgcacatcaggatgttacagagtttggatgattattcataattgtaaaactatctttgaacaatattatgtcaactctagttttgagttctt 33170940  T
Q  105 ggaaatacaagcaaatgagacagctcatagataactaagacgatcacattctcctctagttttgagtttttaacatattttatgtaatgaaatgttataa 204  Q
    |   | ||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33170939 gaggagacaagcaaatgagacggctcataaataactaaggcgaccacattctcctctagttttgagttttgaacatattttatgtaatgaaatgttataa 33170840  T
Q  205 acttcttttcttcnnnnnnnnnnnntctaaaatttcatcttcactggataaaatagctcatatttagatgattcaaattcatatcatacatctttgatct 304  Q
    |||  |||||||             |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33170839 actcattttctt--taaaaaaaaaatctaaaatttcatcttaaccggataaaatagctcatatttagatgattcaaattcatatcatacatctttgatct 33170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 19051551 - 19051627
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtt-tggatggttattcatgaatgtaaaactatctttgaacaatatta 80  Q
    ||||||||||||||||||||||||||| ||||  ||||| |||||||| | ||||||||||| ||||||||||||||    
T  19051551 ttttcatctgcacatcagaatgttacatagttcgggatgattattcataagtgtaaaactatatttgaacaatatta 19051627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 36098776 - 36098908
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagt-ttggatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    ||||||| |||||||||| |||||| ||||| ||| ||  |||||||||| || |||||||| ||||||||||||||||||||||  ||| |||||||      
T  36098776 ttttcatatgcacatcaggatgttatagagtattgcattattattcatgattggaaaactatttttgaacaatattatgttaactaaagtgttgagttta 36098875  T
Q  104 tggaaatacaagcaaatgagacagctcatagat 136  Q
    ||  || ||||||||||||  || |||||||||    
T  36098876 tgagaagacaagcaaatgatgcaactcatagat 36098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 5849109 - 5849241
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    ||||||||| |||||||| |||||||| | | ||| ||| ||||| || | | |||||||||||||||||||| |||||| ||||||||| |||||||      
T  5849109 ttttcatctacacatcaggatgttacataatgtgggatgattatttataattataaaactatctttgaacaatgttatgtcaactctagtgttgagtttg 5849208  T
Q  104 tggaaatacaagcaaatgagacagctcatagat 136  Q
    ||   | |||| |||||||| ||||||||||||    
T  5849209 tgaggagacaaacaaatgaggcagctcatagat 5849241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 15745699 - 15745613
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactct 90  Q
    ||||||||||||| | || |||||||||| ||||| ||| |||| ||| | ||||||||||| ||||||||||||||||| ||||||    
T  15745699 ttttcatctgcacgttaggatgttacagaatttgggatgattatccataattgtaaaactatatttgaacaatattatgtcaactct 15745613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 18579660 - 18579563
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||||||||| ||||  ||||||||| ||||| ||| | ||  || | |||||||||||||| |||||||||||||| |||| |||| |||||||    
T  18579660 ttttcatctgcacgtcaggttgttacagaatttgggatgataatctataattgtaaaactatcttagaacaatattatgtcaactttagtgttgagtt 18579563  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 52585768 - 52585636
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttg-gatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    |||||||||||||||||| |||||||||| |||| |||| ||||| || | ||||||||||||||||||||||||||||| ||||||||| ||||||||     
T  52585768 ttttcatctgcacatcaggatgttacagaatttgagatgattatttataattgtaaaactatctttgaacaatattatgtcaactctagtgttgagttcg 52585669  T
Q  104 tggaaatacaagcaaatgagacagctcatagat 136  Q
    ||   | ||||||||||||| |||| |||||||    
T  52585668 tgatgagacaagcaaatgaggcagcccatagat 52585636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 53581262 - 53581359
Alignment:
Q  5 ttttcatctgcacatcagaatgttacaga-gtttggatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||| ||||| |||| |||||||| | ||| ||||| |||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  53581262 ttttcatttgcacgtcaggatgttacaaaagttgggatgattatccataattgtaaaactatctttgaacaatattatgtcaactctagttttgagtt 53581359  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 8726858 - 8726944
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttg-gatggttattcatgaatgtaaaactatctttgaacaatattatgttaactct 90  Q
    |||| ||| |||||| || ||||||||||||||| |||| |||||||| | ||||||| |||||||||||| ||| |||| ||||||    
T  8726858 ttttaatcagcacattaggatgttacagagtttgtgatgattattcataagtgtaaaattatctttgaacagtatcatgtcaactct 8726944  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 9078745 - 9078831
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttg-gatggttattcatgaatgtaaaactatctttgaacaatattatgttaactct 90  Q
    |||| ||| |||||| || ||||||||||||||| |||| |||||||| | ||||||| |||||||||||| ||| |||| ||||||    
T  9078745 ttttaatcagcacattaggatgttacagagtttgtgatgattattcataagtgtaaaattatctttgaacagtatcatgtcaactct 9078831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 39453150 - 39453114
Alignment:
Q  55 tgtaaaactatctttgaacaatattatgttaactcta 91  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39453150 tgtaaaactatctttgaacaatattatgtcaactcta 39453114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 4136367 - 4136451
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagttt-ggatggttattcatgaatgtaaaactatctttgaacaatattatgttaactct 90  Q
    ||||||||| || ||||||||||||  |||||| ||||| ||||||||   |||||||||| | |||||||||||||||| ||||||    
T  4136367 ttttcatctccagatcagaatgtta--gagtttaggatgattattcatatttgtaaaactaccattgaacaatattatgtcaactct 4136451  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 22911149 - 22911246
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    |||||||||| || |||| |||||||||| ||||| ||| |||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  22911149 ttttcatctgtacgtcaggatgttacagaatttgggatgattatccataattgtaaaactatctttgaacaatattatgtcaactctagttttgagtt 22911246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 23040198 - 23040101
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttg-gatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||||| |||||||| |||||||||| |||| |||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  23040198 ttttcatctacacatcaggatgttacagaatttgcgatgattatccataattgtaaaactatctttgaacaatattatgtcaactctagtgttgagtt 23040101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 48859418 - 48859515
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    |||||||||||||||||| ||||| |||| ||||| ||| |||||||| | ||||||||||||| ||||||||||||| | ||||||||| |||||||    
T  48859418 ttttcatctgcacatcaggatgttgcagaatttgggatgattattcataattgtaaaactatctatgaacaatattatatcaactctagtgttgagtt 48859515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 26754854 - 26754986
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    |||||||| ||||||||| |||||||| | ||||| ||| |||| ||| | ||||||||||||||||||||||||||||| |||| |||| |||||||      
T  26754854 ttttcatcggcacatcaggatgttacataatttgggatgattatccataattgtaaaactatctttgaacaatattatgtcaactatagtgttgagtttg 26754953  T
Q  104 tggaaatacaagcaaatgagacagctcatagat 136  Q
    ||   | ||||||||||||| |||| |||||||    
T  26754954 tgaggagacaagcaaatgaggcagcccatagat 26754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 23586170 - 23586249
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgt 83  Q
    |||||||||||||||||  |||||||| ||||||| ||| |||||||| | |||||||||||||||||||||||||||||    
T  23586170 ttttcatctgcacatcaagatgttacaaagtttgggatgattattcataattgtaaaactatctttgaacaatattatgt 23586249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 13596894 - 13596991
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||| |||||||||||| || ||||||| ||||| ||| | |||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  13596894 ttttcctctgcacatcaggattttacagaatttgggatgataattcataattgtaaaactatctttgaacaatactatgtcaactctagtgttgagtt 13596991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 15026339 - 15026424
Alignment:
Q  9 catctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagt 93  Q
    ||||||||| |||| |||||||| | ||||| ||| |||| |||   ||| ||||||||||||||||||||||||| |||||||||    
T  15026339 catctgcacgtcaggatgttacataatttgggatgattatccatatttgttaaactatctttgaacaatattatgtcaactctagt 15026424  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 15610085 - 15610182
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    |||||||||||||||||| |||||||||| ||||| ||| |||| ||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  15610085 ttttcatctgcacatcaggatgttacagaatttgggatgattatccataattgtaaaactatctttgaacaatactatgtcaactctagtgttgagtt 15610182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 5827549 - 5827646
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||| ||||| |||| |||||||| | ||||| ||| |||| ||| | ||||||||||||||||||||||||||| | ||||||||| |||||||    
T  5827549 ttttcatttgcacgtcaggatgttacaaaatttgggatgattatccataattgtaaaactatctttgaacaatattatatcaactctagtgttgagtt 5827646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 48026240 - 48026143
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||||| |||||||| |||||||| | ||||| ||| |||||||| | ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  48026240 ttttcatctacacatcaggatgttacaaattttgggatgattattcataattgtaaaactatctttgaacaatattatgtcaactctagtgttgagtt 48026143  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 18570421 - 18570375
Alignment:
Q  55 tgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||    
T  18570421 tgtaaaaatatctttgaacaatattatatcaactctagtgttgagtt 18570375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 10260405 - 10260537
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    |||||||||||||||||  |||||||| | ||||| ||| |||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||      
T  10260405 ttttcatctgcacatcatgatgttacataatttgggatgattattcataattgtaaaactatctttgaacaatactatgtcaactctagtgttgagtttc 10260504  T
Q  104 tggaaatacaagcaaatgagacagctcatagat 136  Q
    || | | |||||||||||||  ||| |||||||    
T  10260505 tgaagagacaagcaaatgaggtagcccatagat 10260537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 17834520 - 17834423
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    |||||||||||||||||| |||||||||| ||||| ||| |||||||| | |||| | ||||||||||| |||| ||||| ||||||||| |||||||    
T  17834520 ttttcatctgcacatcaggatgttacagaatttgggatgattattcataattgtatagctatctttgaataatactatgtcaactctagtgttgagtt 17834423  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 9605093 - 9604996
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttg-gatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||| |||||||||  |||||| |||||||| |||| |||||||| | ||||||| ||||||| ||||||||||| | ||||||||| |||||||    
T  9605093 ttttcatttgcacatcaagatgttatagagtttgtgatgattattcataattgtaaaattatctttaaacaatattatatcaactctagtgttgagtt 9604996  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 8871964 - 8871879
Alignment:
Q  38 ggatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttcttggaaatacaagcaaatgag 123  Q
    ||||| |||||||| | | ||||| ||| |||||||||||||||||||||| |||| |||||||  ||   |||||||||||||||    
T  8871964 ggatgattattcataattataaaattatttttgaacaatattatgttaactttagtgttgagtttgtgaggatacaagcaaatgag 8871879  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 8783536 - 8783633
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgga-tggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||||| || ||||| |||||||| | |||||  || |||| ||| | ||||||||||| |||||| || |||||||| |||||||| |||||||    
T  8783536 ttttcatcttcatatcaggatgttacaaaatttggggtgattatacataattgtaaaactatatttgaaaaacattatgttgactctagtgttgagtt 8783633  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 33821311 - 33821271
Alignment:
Q  177 acatattttatgtaatgaaatgttataaacttcttttcttc 217  Q
    |||||||||| ||||||||||| ||||||||||||| ||||    
T  33821311 acatattttaagtaatgaaatgatataaacttctttccttc 33821271  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 44022164 - 44022296
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    ||||||||||||||| || |||||||| | ||||| ||| |||| ||| | || |||||||||||||||||||| ||||| ||||||||| |||||||      
T  44022164 ttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatactatgtcaactctagtgttgagtttg 44022263  T
Q  104 tggaaatacaagcaaatgagacagctcatagat 136  Q
    ||  || |||| |||||||||||||||||||||    
T  44022264 tgagaagacaaacaaatgagacagctcatagat 44022296  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 42132013 - 42132110
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    |||||||||||||||||| |||||||| | ||||| ||| |||| ||| |  |||||||||||||||||||||||||| | ||||||||| |||||||    
T  42132013 ttttcatctgcacatcaggatgttacataatttgggatgattatccataatcgtaaaactatctttgaacaatattatatcaactctagtgttgagtt 42132110  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 32924078 - 32924159
Alignment:
Q  55 tgtaaaactatctttgaacaatattatgttaactctagttttgagttcttggaaatacaagcaaatgagacagctcatagat 136  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||  |  ||| ||||| |||||||||| |||||||||    
T  32924078 tgtaaaactatctttgaacaatatcatgtcaactctagtgttgagtttgtaaaaagacaagtaaatgagacaactcatagat 32924159  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 43896415 - 43896492
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgga-tggttattcatgaatgtaaaactatctttgaacaatattat 81  Q
    |||||| |||||||||| |||| || | |||||||| || |||||||| | |||||||||||||||||||||||||||    
T  43896415 ttttcaactgcacatcataatgctataaagtttggaatgattattcataattgtaaaactatctttgaacaatattat 43896492  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 30939745 - 30939668
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattat 81  Q
    |||||||||||||||||  |||||||| | ||||| ||| |||||||| | | ||||||||||||||| |||||||||    
T  30939745 ttttcatctgcacatcaagatgttacaaaatttgggatgattattcataattttaaaactatctttgatcaatattat 30939668  T

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Target: scaffold0913 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 166
Target Start/End: Original strand, 3519 - 3682
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagttt-ggatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    |||||||||||||||||| |||||||||||||| ||||  |||||||| | ||||||| ||||||||||| ||||||||| ||||||||| |||| ||      
T  3519 ttttcatctgcacatcaggatgttacagagtttgggataattattcataattgtaaaattatctttgaacgatattatgtgaactctagtgttgaatttg 3618  T
Q  104 tggaaatacaagcaaatgagacagctcataga-taactaagacgatcacattctcctctagttt 166  Q
    ||   | ||||||||||||| || ||| |||| || ||||||||  ||||| ||| ||||||||    
T  3619 tgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagttt 3682  T

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Target: scaffold0898 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 2082 - 1919
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagttct 103  Q
    |||||||||||||||||| |||||||||||||||| ||  |||||||| | ||||||| ||||||||||| ||||||||| ||||||||| |||| ||      
T  2082 ttttcatctgcacatcaggatgttacagagtttgggataattattcataattgtaaaattatctttgaacgatattatgtgaactctagtgttgaatttg 1983  T
Q  104 tggaaatacaagcaaatgagacagctcataga-taactaagacgatcacattctcctctagttt 166  Q
    ||   | ||||||||||||| || ||| |||| || ||||||||  ||||| ||| ||||||||    
T  1982 tgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagttt 1919  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 20174537 - 20174634
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttg-gatggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    |||| |||| |||||||  |||||| |||||||| |||| |||||||| | ||||||||||||||||||||||||||||| || |||||| |||||||    
T  20174537 tttttatctacacatcaagatgttatagagtttgagatgattattcataattgtaaaactatctttgaacaatattatgtcaattctagtgttgagtt 20174634  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 17237580 - 17237483
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||||| |||||||  ||||||||||  |||| ||| |||||||| | ||||||||||||||| ||||||| ||||| ||||||||| |||||||    
T  17237580 ttttcatctccacatcatgatgttacagaaattgggatgattattcataactgtaaaactatctttaaacaatactatgtcaactctagtgttgagtt 17237483  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 32296000 - 32295903
Alignment:
Q  5 ttttcatctgcacatcagaatgttacagagtttgg-atggttattcatgaatgtaaaactatctttgaacaatattatgttaactctagttttgagtt 101  Q
    ||||||||||||| |||  ||||| |||| ||||| ||| |||| ||| | |||||||||||||||||||||||| |||| ||||||||| |||||||    
T  32296000 ttttcatctgcacgtcaagatgttgcagaatttgggatgattatccataattgtaaaactatctttgaacaatatcatgtcaactctagtgttgagtt 32295903  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 20174733 - 20174769
Alignment:
Q  176 aacatattttatgtaatgaaatgttataaacttcttt 212  Q
    |||| |||||| |||||||||||||||||||||||||    
T  20174733 aacacattttaagtaatgaaatgttataaacttcttt 20174769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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