View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19951_high_32 (Length: 320)
Name: NF19951_high_32
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 46926176 - 46926480
Alignment:
| Q |
1 |
taagagttacttggagctactggtttaacatgattctgaacaaagtagataatatcattgtaaagcttcttcatgtgagctaactcagacattaacatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926176 |
taagagttacttggagctactggtttaacatgattctgaacaaagtagataatatcattgtaaagcttcttcatgtgagctaactcagacattaacatgt |
46926275 |
T |
|
| Q |
101 |
tgttacttcttcttagtctttcattatcttcagaaagagcagtaacagaagtattgtagttgtttgttgctgttgtttgtgttcctccattaacaaatga |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926276 |
tgttacttcttcttagtctttcattgtcttcagaaagagcagtaacagaagtattgtagttgtttgttgctgttgtttgtgttcctccattaacaaatga |
46926375 |
T |
|
| Q |
201 |
tggtgaagttaatggtggagagtcgcaccagttgttgagttgttcatcagagtaatcattggatggagaaatgctaactctagtgtttgaaaatggaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926376 |
tggtgaagttaatggtggagagtcgcaccagttgttgagttgttcatcagagtaatcattggatggagaaatgctaactctagtgtttgaaaatggaaag |
46926475 |
T |
|
| Q |
301 |
aaact |
305 |
Q |
| |
|
||||| |
|
|
| T |
46926476 |
aaact |
46926480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University