View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_38 (Length: 298)
Name: NF19951_high_38
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_38 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 41484545 - 41484267
Alignment:
| Q |
20 |
atcagtctctccaatgtgattcattacctggaaagctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484545 |
atcagtctctccaatgtgattcattacctggaaagctccttttagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtca |
41484446 |
T |
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| Q |
120 |
tgaattttcttgtgaagtttctctttttctttctgcaacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtag |
219 |
Q |
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| T |
41484445 |
tgaattttcttgtgaagtttctctttttctttctgcaacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtag |
41484346 |
T |
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| Q |
220 |
gtaataggaaaatgaaaagtgtgccttatgttcttttgccaagtacatcattttttcatcagccctttgcttctcctct |
298 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
41484345 |
gtaataggaaaatgaaaagtgtgccttatgttcttctgccaagtacatcattttttcatcagccttttgttgctcctct |
41484267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 40751794 - 40751532
Alignment:
| Q |
20 |
atcagtctctccaatgtgattcattacctggaaagctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
40751794 |
atcagtctctccaatgtgattcattacctggaaagctcctttcagctgttctatctccaattccaatgcttgttttgcatccagtcctctctccaggtca |
40751695 |
T |
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| Q |
120 |
tgaattttcttgtgaagtttctctttttctttctgcaacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtag |
219 |
Q |
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| T |
40751694 |
tgaattttcttgtgaagtttctccttttctttctgcaacatccaaccaaaagagtcctcaaaacctaagtatatacatgaaactgaattaaaaactgtcg |
40751595 |
T |
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| Q |
220 |
gtaataggaaaatgaaaagtgtgccttatgttcttttgccaagtacatcattttttcatcagc |
282 |
Q |
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| T |
40751594 |
ataataggaaaatgaaatgcgtgccttatgttcttccgccaaatacatcattttttcatcagc |
40751532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 41477539 - 41477271
Alignment:
| Q |
20 |
atcagtctctccaatgtgattcattacctggaaagctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtca |
119 |
Q |
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| T |
41477539 |
atcagtctctccaatgtgattcattacctggaaagctcctttcagccgttctatctccaactccaatgcttgttttgcatcaagtcctctctccaggtca |
41477440 |
T |
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| Q |
120 |
tgaattttcttgtgaagtttctctttttctttctgcaacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtag |
219 |
Q |
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| T |
41477439 |
tgaattttcttgtgaagtttctccttttctttctgcaacatccaaccaaaagagtcctcaaaactgaagtatataaatgttactgaattaaaaactgtag |
41477340 |
T |
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| Q |
220 |
gtaataggaaaatgaaaagtgtgccttatgttcttttgccaagtacatcattttttcatcagccctttg |
288 |
Q |
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||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
41477339 |
ataaaaggaaagtgaaatacttgccttatgttcttcagccaaagacatcattttttcatcagccttttg |
41477271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 41470651 - 41470392
Alignment:
| Q |
20 |
atcagtctctccaatgtgattcattacctggaaagctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtca |
119 |
Q |
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| T |
41470651 |
atcagtctctcgaatgtgactcattacctggagagctcctttcagccgttc------caattccaatgtttgttttgcaccaagacctctctccaggtca |
41470558 |
T |
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| Q |
120 |
tgaattttcttgtgaagtttctctttttctttctgcaacatccaaccaaaagagtccttaaaacttaagtat-atacatgcaactgaattaaaaactgta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| | |||||| ||||||| |||| |||||| |
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| T |
41470557 |
tgaattttcttgtgaagtttctctttttctttctgcatcatccaaccaaaagagttctcaaaacttaagtttgatacat-taactgaactaaatactgta |
41470459 |
T |
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| Q |
219 |
ggtaataggaaaatgaaaagtgtgccttatgttcttttgccaagtacatcattttttcatcagccct |
285 |
Q |
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| T |
41470458 |
gataaaaggaaaacgaaatgtgtgccttatgctcttcggccaaatacatcattttttcatcggccct |
41470392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 16408172 - 16408440
Alignment:
| Q |
20 |
atcagtctctccaatgtgattcattacctggaaagctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtca |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | |||||||| | ||||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
16408172 |
atcagtctctccaatgtgattcattacctggaaagctcctcttagccgttcaacttccaactccaatgcttgttttgcatcaagtcctctctccaggtca |
16408271 |
T |
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| Q |
120 |
tgaattttcttgtgaagtttctctttttctttctgcaacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||| | ||||| |||||||||||||||| || |
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| T |
16408272 |
tgaattttcttgtgaagtttctctttttctttctgcaacatacaaccaaaatagtcctcaaaacttgagtggacacatgtaactgaattaaaaactcgag |
16408371 |
T |
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| Q |
220 |
gtaataggaaaatgaaaagtgtgccttatgttcttttgccaagtacatcattttttcatcagccctttg |
288 |
Q |
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||| || ||||||||| ||||||||||| |||| || || ||||||||||||||| ||| |||| |
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| T |
16408372 |
ataaaagaaaaatgaaatctgtgccttatggtcttcagctaaacgcatcattttttcatcggccttttg |
16408440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 52481190 - 52481057
Alignment:
| Q |
43 |
ttacctggaaagctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctc |
142 |
Q |
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|||||| ||||||| || ||| | |||| || |||||||||||||| ||||| |||||||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
52481190 |
ttacctcgaaagcttctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc |
52481091 |
T |
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| Q |
143 |
tttttctttctgcaacatccaaccaaaagagtcc |
176 |
Q |
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| T |
52481090 |
cttttctttctgcaacatccaaccaaaagagtcc |
52481057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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