View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_high_42 (Length: 289)

Name: NF19951_high_42
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_high_42
NF19951_high_42
[»] chr2 (2 HSPs)
chr2 (53-270)||(32036596-32036813)
chr2 (181-268)||(42796343-42796430)
[»] chr1 (2 HSPs)
chr1 (181-270)||(11748123-11748212)
chr1 (181-249)||(9886029-9886098)
[»] chr6 (1 HSPs)
chr6 (181-264)||(7318583-7318666)
[»] chr4 (3 HSPs)
chr4 (181-243)||(3335497-3335559)
chr4 (194-270)||(19585436-19585512)
chr4 (204-268)||(856720-856784)
[»] chr5 (3 HSPs)
chr5 (181-246)||(11990963-11991027)
chr5 (181-244)||(17230574-17230637)
chr5 (181-245)||(32717500-32717565)
[»] chr3 (3 HSPs)
chr3 (181-268)||(38191731-38191819)
chr3 (181-240)||(11657489-11657548)
chr3 (181-268)||(13612796-13612884)
[»] chr7 (2 HSPs)
chr7 (191-246)||(15132069-15132124)
chr7 (181-246)||(29758860-29758924)
[»] chr8 (1 HSPs)
chr8 (182-269)||(29959590-29959678)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 53 - 270
Target Start/End: Complemental strand, 32036813 - 32036596
Alignment:
Q  53 gagattccacttgagttaacctttatgaaaggcgaatccataccttataaattatgcttaaaaaatttatttcaagtgttgactgaataatatcataaag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32036813 gagattccacttgagttaacctttatgaaaggcgaatccataccttataaattatgcttaaaaaatttattttaagtgttgactgaataatatcataaag 32036714  T
Q  153 gaccctaaaaaattaatcttgnnnnnnnataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatcttttacc 252  Q
    | |||| ||||||||||||||       | |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  32036713 ggccctgaaaaattaatcttgtttttttacaaggcaaaagcaaacgacatcaaaaagagtggctcctaactaggttggtattcaactctaatcttctacc 32036614  T
Q  253 aaaagctcatatatatta 270  Q
    ||| ||||||||||||||    
T  32036613 aaatgctcatatatatta 32036596  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 42796343 - 42796430
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatatatat 268  Q
    ||||||||| ||||||||||||||||||||||| | || ||||| ||||||| |||| ||||||||||| | ||| ||||||||||||    
T  42796343 ataaggcaagagcaaatgacatcaaaaagagtgacacccaattaagttggtacccaattctaatcttttgctaaatgctcatatatat 42796430  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 11748123 - 11748212
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatatatatta 270  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||  || ||||||| | || ||||| ||||||||||||||    
T  11748123 ataaggcaaaagcaaatgatatcaaaaagaatggctcccaattaggttggtactcacctctaatttgttgccaaatgctcatatatatta 11748212  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 9886098 - 9886029
Alignment:
Q  181 ataaggcaaaagcaaa-tgacatcaaaaagagtggctcctaattaggttggtatccaactctaatctttt 249  Q
    |||||||||||||||| ||||||||||| |||||||| | || || ||||||||||||||||||| ||||    
T  9886098 ataaggcaaaagcaaaatgacatcaaaaggagtggcttccaactaagttggtatccaactctaatatttt 9886029  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 7318666 - 7318583
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatat 264  Q
    ||||||||| || ||||||||| ||||||||||||||| || || ||||||| ||| ||||||||| ||| |||| ||||||||    
T  7318666 ataaggcaagagtaaatgacataaaaaagagtggctcccaactaagttggtacccatctctaatctattatcaaatgctcatat 7318583  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 3335559 - 3335497
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaa 243  Q
    ||||||| | ||||||||||||||||||||| | |||| || || ||||||||||||||||||    
T  3335559 ataaggccagagcaaatgacatcaaaaagagcgactcccaaataagttggtatccaactctaa 3335497  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 19585436 - 19585512
Alignment:
Q  194 aaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatatatatta 270  Q
    ||||||||| |||||||| |||||| || || ||||||| || |||||||||||||  |||| ||||||| ||||||    
T  19585436 aaatgacataaaaaagagaggctcccaactaagttggtaccctactctaatcttttgtcaaatgctcataaatatta 19585512  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 856784 - 856720
Alignment:
Q  204 aaaaagagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatatatat 268  Q
    ||||||||||||||  || || ||||||| |||||||||||||| | ||||| ||||||| ||||    
T  856784 aaaaagagtggctcgcaactaagttggtacccaactctaatcttctgccaaatgctcataaatat 856720  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 11991027 - 11990963
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatct 246  Q
    ||||||||| |||||| ||||| ||| ||||||||||| || || |||||||||||||||||||||    
T  11991027 ataaggcaagagcaaa-gacataaaatagagtggctcccaactaagttggtatccaactctaatct 11990963  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 17230574 - 17230637
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaat 244  Q
    ||||||||| | |||||||||| ||||||||||||||| ||| | ||||||| | |||||||||    
T  17230574 ataaggcaagaacaaatgacataaaaaagagtggctcccaatgaagttggtacctaactctaat 17230637  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 32717500 - 32717565
Alignment:
Q  181 ataaggcaaaagc-aaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatc 245  Q
    ||||||||||||  ||||||||| ||||||||||||||| || || ||||||| || |||||||||    
T  32717500 ataaggcaaaagagaaatgacataaaaaagagtggctcccaactaagttggtaccctactctaatc 32717565  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 38191819 - 38191731
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaa-aaagagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatatatat 268  Q
    ||||||||| |||||||||||| || ||||||||||| | || || ||||||| |||||||||||||| |  |||| ||||||| ||||    
T  38191819 ataaggcaagagcaaatgacataaacaaagagtggcttccaactaagttggtacccaactctaatcttctgtcaaatgctcataaatat 38191731  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 11657489 - 11657548
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactc 240  Q
    ||||||||| |||||||||||| ||||||||||||| | || || ||||||| |||||||    
T  11657489 ataaggcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactc 11657548  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 13612796 - 13612884
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaa-agagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatatatat 268  Q
    ||||||||| |||||||||||  |||| ||||||||| | || || ||||||| |||||||||| ||| | ||||| ||||||| ||||    
T  13612796 ataaggcaagagcaaatgacaaaaaaacagagtggcttccaactaagttggtacccaactctaaacttctgccaaatgctcataaatat 13612884  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 15132069 - 15132124
Alignment:
Q  191 agcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatct 246  Q
    |||||||||||| |||||||||||||   ||||| ||| |||||||||||||||||    
T  15132069 agcaaatgacataaaaaagagtggctttcaattaagttagtatccaactctaatct 15132124  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 29758924 - 29758860
Alignment:
Q  181 ataaggcaaaagcaaatgacatcaaaaagagtggctcctaattaggttggtatccaactctaatct 246  Q
    ||||||||| |||||| ||||| ||| ||||||||||| || || ||||||| |||||||||||||    
T  29758924 ataaggcaagagcaaa-gacataaaatagagtggctccaaactaagttggtacccaactctaatct 29758860  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 29959590 - 29959678
Alignment:
Q  182 taaggcaaaagcaaa-tgacatcaaaaagagtggctcctaattaggttggtatccaactctaatcttttaccaaaagctcatatatatt 269  Q
    |||| |||||||||| |||||| |||||||  |||||| ||||| ||||||| |  |||||||||||||  |||| ||||||| |||||    
T  29959590 taagacaaaagcaaaatgacataaaaaagataggctcccaattaagttggtaccatactctaatcttttgtcaaatgctcataaatatt 29959678  T

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