View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_46 (Length: 275)
Name: NF19951_high_46
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 3354227 - 3354483
Alignment:
| Q |
3 |
cagtaaagataaagaaggatggagagatctatcaaattaagatctccaccatgaccaagattagaaagacgaccgacccaaggattgacttcttggtaaa |
102 |
Q |
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| T |
3354227 |
cagtaaagataaagaaggatggagagatctatcaaattaagatctccaccatgaccaagattagaaagacgaccgacccaaggattgacttcttggtaaa |
3354326 |
T |
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| Q |
103 |
catacttgatctctcaattccggttagagataaagtttattgaaagaaggggaagcaaaaatagagattatctataattgaaatatatattccatagcaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3354327 |
catacttgatctctcaattccggttagagataaagtttattgaaagaaggggaagcaaaaatagagattatctataattgaaatatatattccatagcaa |
3354426 |
T |
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| Q |
203 |
attgaaatattcattatattttgtagaaaagcattcacaccacaaccaataataaac |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3354427 |
attgaaatattcattatattttgtagaaaagcattcacaccacaaccaataataaac |
3354483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 3724389 - 3724326
Alignment:
| Q |
196 |
atagcaaattgaaatattcattatattttgtagaaaagcattcacaccacaaccaataataaac |
259 |
Q |
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| T |
3724389 |
atagcaaattgaaatatccattatattttttagtaatgcattcacaccaaaaccaataataaac |
3724326 |
T |
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