View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_5 (Length: 648)
Name: NF19951_high_5
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 37789939 - 37790420
Alignment:
| Q |
1 |
tataagatctaggttcgacttcatatcctctataagcgttcaacaagcacagccaaatcttgattgtatcttgactcaattgtcgagatttagctacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37789939 |
tataagatctaggttcgacttcatatcctctataagcgttcaacaagcgcagccaaatcttgattgtatcttgactcaattgtcgagatttaactacatt |
37790038 |
T |
|
| Q |
101 |
agatgaacgatttcacatgattcgacttcagttatattggccaaatcctctaaaacattcaaccagtgccgccaaatcttgaatgtttgatttgagttgt |
200 |
Q |
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|||||||||||||||||||||||||||| | ||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37790039 |
agatgaacgatttcacatgattcgactttaattatatttgccaaatcctttaaagcattcaaccagtgccaccaaatcttgaatgtttgatttgagttgt |
37790138 |
T |
|
| Q |
201 |
atcttgatctgagggttaaaattatacgacataataagtttagtataattgttaagactaattgttttataaaacataattccctccccaacctgcattc |
300 |
Q |
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| T |
37790139 |
atcttgatctgagggttaaaattatacgacataataagtttagtataattgttaagactaattgttttataaaacttaattccctccccaacctgcattc |
37790238 |
T |
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| Q |
301 |
caaaacaaatatgtttaaaaatttgagcaagctggctgttacaagattttattcttaggtgaaatttataatatgacaaaattgtgtgaaagtttaacac |
400 |
Q |
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| T |
37790239 |
caaaacaaatatgtttaaaaatttgagcaagctggctgttacaagattttattcttaggtgaaatttataatatgacaaaattgtgtgaaagtttaacac |
37790338 |
T |
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| Q |
401 |
gagagaagtccattcctatgctccctatcgactacgtgatcactacctttcctttagggatgatgataatataataagagta |
482 |
Q |
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| T |
37790339 |
gagagaagtccattcctatgctccctatcgactacgtgatcactacctttcctttagggatgatgataatataataagagta |
37790420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 494 - 638
Target Start/End: Original strand, 37790406 - 37790550
Alignment:
| Q |
494 |
aatataataagagtattttaacatgaacccgtgacaaatttaaattatttcattttggctaatccgtgatgattatgctggatctatccgtgattaccta |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37790406 |
aatataataagagtattttaacatgaacccgtgacaaatttaaattatttcattttggctaatccgtgatgattatgctggatctatccgtgattaccta |
37790505 |
T |
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| Q |
594 |
tatagtttaattatgattaaattggacccacaaaaattgtctctg |
638 |
Q |
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| T |
37790506 |
tatagtttaattatgattaaattggacccacaaaaattgtctctg |
37790550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 583
Target Start/End: Complemental strand, 3925861 - 3925819
Alignment:
| Q |
541 |
tttcattttggctaatccgtgatgattatgctggatctatccg |
583 |
Q |
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| T |
3925861 |
tttcattttggctaatccgtgatgattatggtggatctatccg |
3925819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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