View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_51 (Length: 270)
Name: NF19951_high_51
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 31950671 - 31950522
Alignment:
| Q |
113 |
aactgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacat |
212 |
Q |
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| T |
31950671 |
aactgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacat |
31950572 |
T |
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| Q |
213 |
gtgatttttcattggcaatatgatatattcctttaatatgcatattcttc |
262 |
Q |
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| T |
31950571 |
gtgatttttcattggcaatatgatatattcctttaatattcattttcttc |
31950522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 116 - 255
Target Start/End: Original strand, 31951927 - 31952066
Alignment:
| Q |
116 |
tgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacatgtg |
215 |
Q |
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| T |
31951927 |
tgattccaattgaacgacactaagatctatgaagccttattttacccacatattgtgttaagctgttcaaatttgttaaacatttatgtctaaacctgtg |
31952026 |
T |
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| Q |
216 |
atttttcattggcaatatgatatattcctttaatatgcat |
255 |
Q |
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| T |
31952027 |
ttttttcactggcaatatgatatatttttttaatatgcat |
31952066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 113 - 260
Target Start/End: Complemental strand, 3498157 - 3498012
Alignment:
| Q |
113 |
aactgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacat |
212 |
Q |
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| T |
3498157 |
aactaattacaattgaatggcactaagatctgtgaagccttattttacc--catattgtgttaaactgttcaagttttttaaacatttatgtctaaacct |
3498060 |
T |
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| Q |
213 |
gtgatttttcattggcaatatgatatattcctttaatatgcatattct |
260 |
Q |
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| T |
3498059 |
gtgttttttcactggcaatatgatatattcctttaatatgcattttct |
3498012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 22927431 - 22927492
Alignment:
| Q |
119 |
ttccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgtt |
182 |
Q |
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| T |
22927431 |
ttccaattgaatgacattaagatctatgaagccttattttacc--cattttgtgttaatctgtt |
22927492 |
T |
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