View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_53 (Length: 268)
Name: NF19951_high_53
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 18253467 - 18253246
Alignment:
| Q |
25 |
caaaccaaatattaggaaaatacagcacgtacgtttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaatcagaaacag |
124 |
Q |
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| T |
18253467 |
caaaccaaatattaggaaaatacaacatgtacgtttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaaccagaaacag |
18253368 |
T |
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| Q |
125 |
acacaacgaaatgaaatataaataattgaaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagtttaaccacta |
224 |
Q |
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| T |
18253367 |
acacaacgaaatgaaagataaataattaaaagaaaacccagtaatcctgaagattcctcattctttcatatgaataacatc----atagtttaaccacta |
18253272 |
T |
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| Q |
225 |
cctccaagaacactcttaagcttctt |
250 |
Q |
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|||||||||||||||||||||||||| |
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| T |
18253271 |
cctccaagaacactcttaagcttctt |
18253246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 18256230 - 18256322
Alignment:
| Q |
153 |
aaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagtttaaccactacctccaagaacactcttaagcttctt |
250 |
Q |
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| T |
18256230 |
aaagaaaagccagtaa-catgaagattcctcactctttcatatgaataacatcataa----tttaaccacgacctccaagaatacccttaagcttctt |
18256322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 18246178 - 18246142
Alignment:
| Q |
214 |
tttaaccactacctccaagaacactcttaagcttctt |
250 |
Q |
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| T |
18246178 |
tttaaccactacctccaagaacacccttaagcttctt |
18246142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18246347 - 18246303
Alignment:
| Q |
40 |
gaaaatacagcacgtacgtttattcatctcatgtcacaaatttct |
84 |
Q |
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||||||||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
18246347 |
gaaaatacaacacatacatttattcatctcatgtcacaaatttct |
18246303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 18256132 - 18256191
Alignment:
| Q |
26 |
aaaccaaatatt-aggaaaatacagcacgtacgtttattcatctcatgtcacaaatttct |
84 |
Q |
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|||||||||||| | ||||||| | ||| ||| ||||||||||||||||||||||||||| |
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| T |
18256132 |
aaaccaaatattcaagaaaataaaacacatacatttattcatctcatgtcacaaatttct |
18256191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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