View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_56 (Length: 258)
Name: NF19951_high_56
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 21818146 - 21818390
Alignment:
| Q |
8 |
gacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaattacaaataga |
107 |
Q |
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| T |
21818146 |
gacaagatgctaaccaagatcagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaattacaaataga |
21818245 |
T |
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| Q |
108 |
gggaaagctgcagcctctttgtttcaagttctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtggtatatctaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21818246 |
gggaaagctgcagcctctttgtttcaagttctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtgggatatctaca |
21818345 |
T |
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| Q |
208 |
ctccatatcgttttggcccaacgaagctcttgaaattgatgatgt |
252 |
Q |
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| T |
21818346 |
ctccatatcgttttggcccaatgaagctcttgaaattgatgatgt |
21818390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 14369032 - 14368941
Alignment:
| Q |
8 |
gacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaatta |
99 |
Q |
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| T |
14369032 |
gacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaatta |
14368941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 16010582 - 16010698
Alignment:
| Q |
136 |
ttctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtggtatatctacactccatatcgttttggcccaacgaagct |
235 |
Q |
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| T |
16010582 |
ttctcatctgtaggaattttgttgtacatcaatctccaaacaaatagagattttgagggagggacatcaacactccaaatggttttggcccaatggagat |
16010681 |
T |
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| Q |
236 |
cttgaaattgatgatgt |
252 |
Q |
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| T |
16010682 |
cttgaaactgatgatgt |
16010698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 43581183 - 43581139
Alignment:
| Q |
184 |
gattttgaaggtggtatatctacactccatatcgttttggcccaa |
228 |
Q |
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|||||||||||||| ||||| ||||||||||| || ||||||||| |
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| T |
43581183 |
gattttgaaggtggaatatcaacactccatattgtattggcccaa |
43581139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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