View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_62 (Length: 248)
Name: NF19951_high_62
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_62 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 21309996 - 21310223
Alignment:
| Q |
10 |
atgaatgaaaaacaacaacgtaccaatccatctccattaaacgacgaatttgattaaccaacgctctctacccaagcgactatctgtcacacctttcttt |
109 |
Q |
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| T |
21309996 |
atgaatgagaaacaacaacgtaccaatccatct----taaacgacgaatttgtttaaccagcgctct--acccaagcgactatctgtcacacctttcttt |
21310089 |
T |
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| Q |
110 |
atagtcttctacacactaacacaatctacattcaattctattctactgctgcatatcccatccttctcacatatctcagaccctccaacactccccaaat |
209 |
Q |
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| T |
21310090 |
atagtcttctccacactaacacaatctacattcaattc-----tactgctgcatatcccatccttctcacatatctcagaccctccaacactccccaaag |
21310184 |
T |
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| Q |
210 |
ctccgccacaaatgcactgcactcgtcaatgaatttagc |
248 |
Q |
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| T |
21310185 |
ctccgccacaaacgcattgcactcgccaatgaatttagc |
21310223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 31338335 - 31338561
Alignment:
| Q |
10 |
atgaatgaaaaacaacaacgtaccaatccatctccattaaacgacgaatttgattaaccaacgctctctacccaagcgactatctgtcacacctttcttt |
109 |
Q |
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| T |
31338335 |
atgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctct--acccaagcgactatctgtcacaccttccttt |
31338432 |
T |
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| Q |
110 |
atagtcttctacacactaacacaatctacattcaattctattctactgctgcatatcccatccttctcacatatctcagaccctccaacactccccaaat |
209 |
Q |
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| T |
31338433 |
atagtcttctccaaactaacataatctacattcaattcaa-----ctgctgtatatctcatccttctcacatatttcaaa-----cagtactccccaaag |
31338522 |
T |
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| Q |
210 |
ctccgccacaaatgcactgcactcgtcaatgaatttagc |
248 |
Q |
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| T |
31338523 |
ctccgccaaaaacgcattgcactcgccaatgaatttagc |
31338561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 31338564 - 31338650
Alignment:
| Q |
162 |
atatcccatccttctcacatatctcagaccctccaacactccccaaatctccgccacaaatgcactgcactcgtcaatgaatttagc |
248 |
Q |
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| T |
31338564 |
atatcccatccttctcacatatctcaaaccctcaaacactccccaaagctccaccacaaacgcattgcactcgccaatgaatttagc |
31338650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 42652589 - 42652646
Alignment:
| Q |
164 |
atcccatccttctcacatatctcagaccctccaacactccccaaatctccgccacaaa |
221 |
Q |
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| T |
42652589 |
atcccatccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaa |
42652646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 246
Target Start/End: Original strand, 4486323 - 4486489
Alignment:
| Q |
75 |
ctctacccaagcgactatctgtcacacctttctttatagtcttctacacactaacacaatctacattcaattctattctactgctgcatatcccatcctt |
174 |
Q |
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| T |
4486323 |
ctctacccaaacgactatctgtcataccttcctttatagtcttcttcacactaatagaatccacattca-----attcaactgctctagatcccatcctt |
4486417 |
T |
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| Q |
175 |
ctcacatatctcagaccctccaacactccccaaatctccgccacaaatgcactgcactcgtcaatgaattta |
246 |
Q |
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| T |
4486418 |
cttgcatatatcgaaccttgcaacactccccaaagctcttccacaaacgcactacaatcgccaatgaattta |
4486489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 50564843 - 50564760
Alignment:
| Q |
164 |
atcccatccttctcacatatctcagaccctccaacactccccaaatctccgccacaaatgcactgcactcgtcaatgaatttag |
247 |
Q |
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| T |
50564843 |
atcccatccttctcgcatagctcaaaccctccaacactactcaaagctcaaccacaaacgcactacaattgccaatgaatttag |
50564760 |
T |
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