View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_high_64 (Length: 244)

Name: NF19951_high_64
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_high_64
NF19951_high_64
[»] chr4 (4 HSPs)
chr4 (17-90)||(34492929-34493004)
chr4 (142-227)||(34493143-34493236)
chr4 (13-69)||(34484017-34484073)
chr4 (18-70)||(34491479-34491531)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 34492929 - 34493004
Alignment:
Q  17 tgagattgtgagctaaaagttatgaatgcaaaaccaagagcaaagaaat--tgagtgtattttgctacaaaactga 90  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  34492929 tgagattgtgaggtaaaagttatgaatgcaaaaccaagagcaaagaaatagagagtgtattttggtacaaaactga 34493004  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 34493143 - 34493236
Alignment:
Q  142 actaatcacgtaacataataggagacgcattaaa--------ctagcatttatgccaactaaacactattcttcccattctactaactctctta 227  Q
    ||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  34493143 actaatcacgtaacataataggagacgcattaaaacattaaactaacatttatgccaactaaacactattcttcccattctccaaactctctta 34493236  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 34484017 - 34484073
Alignment:
Q  13 aatatgagattgtgagctaaaagttatgaatgcaaaaccaagagcaaagaaattgag 69  Q
    |||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||    
T  34484017 aatatgagattgtgaggttaaaattatgaatgcaaaatcaagagcaaagaaattgag 34484073  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 34491479 - 34491531
Alignment:
Q  18 gagattgtgagctaaaagttatgaatgcaaaaccaagagcaaagaaattgagt 70  Q
    ||||||||||| | ||| ||||||||||||||| |||||||||||||||||||    
T  34491479 gagattgtgaggttaaaattatgaatgcaaaactaagagcaaagaaattgagt 34491531  T

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