View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_high_67 (Length: 239)
Name: NF19951_high_67
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 21310316 - 21310521
Alignment:
| Q |
16 |
atcattttcatgcaactccttattcctccatgtccacaaacaatggcatgttattgcccaaataactttcctatctctatcccctctccaaccagcatca |
115 |
Q |
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| T |
21310316 |
atcattttcatgcaactcctaattcctccatgtccacaaacaatggcatgttattgcccaaatatctttccaatctctatcccccctccaaccagcatca |
21310415 |
T |
|
| Q |
116 |
tggcttaaattgatattaagacctttccacaacggcagcaccaatggacaatcccttaaagcatgtaaacttgtttcctccacgtcaccacaataagcac |
215 |
Q |
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| T |
21310416 |
tggcttaaattgagattaagacctttccacaacggcagcaccaatggacaatcccttaaagcatgtaaacttgtttcctccacgtcaccacaataagcac |
21310515 |
T |
|
| Q |
216 |
acatag |
221 |
Q |
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|||||| |
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| T |
21310516 |
acatag |
21310521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 47310015 - 47309977
Alignment:
| Q |
22 |
ttcatgcaactccttattcctccatgtccacaaacaatg |
60 |
Q |
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| T |
47310015 |
ttcatgcaactccttattgctccacgtccacaaacaatg |
47309977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 42652829 - 42652932
Alignment:
| Q |
19 |
attttcatgcaactccttattcctccatgtccacaaacaatggcatgttattgcccaaataactttcctatctctatcccctctccaaccagcatcatgg |
118 |
Q |
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| T |
42652829 |
attttcatgcaacccctttttcttccatgtccacaaacaatggcatgttgttgcccaaatatctttccaatatccattccccctccaaccagcatcatga |
42652928 |
T |
|
| Q |
119 |
ctta |
122 |
Q |
| |
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|||| |
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| T |
42652929 |
ctta |
42652932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 50564521 - 50564412
Alignment:
| Q |
19 |
attttcatgcaactccttattcctccatgtccacaaacaatggcatgttattgcccaaataactttcctatctctatcccctctccaaccagcatcatgg |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||| ||||| || ||| ||||||| |||||| | |
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| T |
50564521 |
attttcatgcaactccttattcctccatgtcgacaaacaatggcatgttgtcgcccaaatatctttccaatctccattccccttccaaccggcatcaaga |
50564422 |
T |
|
| Q |
119 |
cttaaattga |
128 |
Q |
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||||| |||| |
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|
| T |
50564421 |
cttaagttga |
50564412 |
T |
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