View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19951_high_7 (Length: 616)
Name: NF19951_high_7
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 43818045 - 43817430
Alignment:
| Q |
1 |
acctgagggtttggtaaccgtctctcccaatctacctttaaggtagatcaaacccnnnnnnntatcatgttgatgaaaccaaaacgaagtaacaatccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43818045 |
acctgagggtttggtaaccgtctctcccaatctacctttaaggtagatcaaacccaaaaaaatatcatgttgatgaaaccaaaacgaagtaacaatccct |
43817946 |
T |
|
| Q |
101 |
ttattgaatccaaataatcatatcttagttttcattatttctcatttctccaacatagaaaaaagaaacaccaatcatacatttcctaatctgatttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43817945 |
ttattgaatccaaataatcatatcttagttttcattatttctcatttctccaacatagaaaaaagaaacaccaatcattcatttcctaatctgatttgtt |
43817846 |
T |
|
| Q |
201 |
ttcattaaaaacgtgacgattagggaattgaaattgaaatagatacatagaagaaatgaaaaatttccacattttatgtggaatcgtaatatcctcgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817845 |
ttcattaaaaacgtgacgattagggaattgaaattgaaatagatacatagaagaaatgaaaaatttccacattttatgtggaatcgtaatatcctcgttg |
43817746 |
T |
|
| Q |
301 |
ttatcatatgtgacatgctttgacggtgcaatacacgaagctggtctaacatgcgggacttatcaataccctcatgatggtaacaatactaacaatcaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817745 |
ttatcatatgtgacatgctttgacggtgcaatacacgaagctggtctaacatgcgggacttatcaataccctcatgatggtaacaatactaacaatcaca |
43817646 |
T |
|
| Q |
401 |
agttgaagcaaaacttgatggttgtaatggacgcggtctcatttcaggtgaaacagcaggggtggggagcacaaacattagttggtaattggcatccaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817645 |
agttgaagcaaaacttgatggttgtaatggacgcggtctcatttcaggtgaaacagcaggggtggggagcacaaacattagttggtaattggcatccaat |
43817546 |
T |
|
| Q |
501 |
gtatgcattaggccaatgtcaacgcgatcttgatccgacacaatgcaacatttgtttcacccaagcaagacaattgttatcgaggtgcataccaaaggtt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817545 |
gtatgcattaggccaatgtcaacgcgatcttgatccgacacaatgcaacatttgtttcacccaagcaagacaattgttatcgaggtgcataccaaaggtt |
43817446 |
T |
|
| Q |
601 |
tcaggtagaatttacc |
616 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43817445 |
tcaggtagaatttacc |
43817430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University