View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_10 (Length: 524)
Name: NF19951_low_10
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 43580341 - 43580843
Alignment:
| Q |
1 |
atagcatacaatgatttttctaatcaaattaactctcaagcatcacaattacaatcattatataagagttttcaaagatttgagtgcttgagaaaagaaa |
100 |
Q |
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| T |
43580341 |
atagcatacaatgatttttctaatcaaattaactctcaagcatcacaattacaatcattatataggagttttcaaatatttgagtgcttgagaaaagaaa |
43580440 |
T |
|
| Q |
101 |
aatgagaaaattccgtgttaagaaaaattgttagtacgtaatgaactatatagcttttgagaatagaaggaataaactcattagaaagtgtgaatctatt |
200 |
Q |
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| T |
43580441 |
aatgagaaaattccgtgttaagaaaaattgttagta----atgaactatatagcttttgagaatagaaggaataaactcattagaaagtgtgaatcgatt |
43580536 |
T |
|
| Q |
201 |
cacatattcacacataaatattttacggatcaattcgatgtttaaaacaatatttattgataaacaaagagtcgattcactcattcataaatcttgagat |
300 |
Q |
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| T |
43580537 |
cacatattcacacataaatattttacggatcaattcgatgtttaaaacaatatttattgataaacaaagagtcgattcactcattcataaatcttgagct |
43580636 |
T |
|
| Q |
301 |
gtgaatgaattcacatcaataaaaatataataagtcaattttcatacagtgaatcaattcatatgtataaaagtgaaatgattcatgttaacatagcttt |
400 |
Q |
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| T |
43580637 |
gtgaatgaattcacatcaataaaaatataataagtcaattttcatacagtgaatcaattcatatgtataaaagtgaaatgattcatgttaacatagcttt |
43580736 |
T |
|
| Q |
401 |
caaaaacatgcatataagatttc--taggagagcagggatgtgattcttaatgggcagttatttacatatattttaaagtactatttttggaccctaatc |
498 |
Q |
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||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43580737 |
caaaaacatgcatataagatttctataggagagtagtgatgtgattcttaatggacagttatttacatatattttaaagtactatttttggaccctaatc |
43580836 |
T |
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| Q |
499 |
aaaacct |
505 |
Q |
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| T |
43580837 |
aaaacct |
43580843 |
T |
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