View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_11 (Length: 514)

Name: NF19951_low_11
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_11
NF19951_low_11
[»] chr5 (17 HSPs)
chr5 (18-229)||(42637357-42637568)
chr5 (258-504)||(42637570-42637804)
chr5 (30-79)||(40545117-40545166)
chr5 (325-384)||(42629932-42629991)
chr5 (18-79)||(31789522-31789583)
chr5 (326-386)||(9575748-9575808)
chr5 (20-75)||(15807728-15807783)
chr5 (20-79)||(40549277-40549336)
chr5 (461-499)||(30651132-30651170)
chr5 (461-499)||(31777478-31777516)
chr5 (30-84)||(37512892-37512946)
chr5 (19-120)||(41859671-41859772)
chr5 (30-83)||(42629649-42629702)
chr5 (18-69)||(32032881-32032932)
chr5 (327-381)||(16487064-16487118)
chr5 (447-499)||(9575874-9575926)
chr5 (451-499)||(42630061-42630109)
[»] chr3 (2 HSPs)
chr3 (18-76)||(5162455-5162513)
chr3 (447-499)||(2703337-2703389)
[»] chr6 (8 HSPs)
chr6 (18-126)||(32744869-32744977)
chr6 (20-76)||(29145307-29145363)
chr6 (27-85)||(29131310-29131368)
chr6 (17-86)||(32740722-32740791)
chr6 (18-78)||(29137291-29137351)
chr6 (17-76)||(29012843-29012902)
chr6 (451-499)||(23216418-23216466)
chr6 (18-78)||(29124157-29124217)
[»] scaffold0129 (2 HSPs)
scaffold0129 (17-78)||(10484-10545)
scaffold0129 (451-499)||(17601-17649)
[»] scaffold0134 (1 HSPs)
scaffold0134 (30-78)||(16246-16294)
[»] scaffold0613 (1 HSPs)
scaffold0613 (27-78)||(206-257)
[»] chr7 (4 HSPs)
chr7 (17-76)||(42446348-42446407)
chr7 (30-78)||(5438321-5438369)
chr7 (30-78)||(5447297-5447345)
chr7 (461-499)||(25627763-25627801)
[»] chr1 (3 HSPs)
chr1 (17-84)||(368798-368865)
chr1 (454-498)||(344684-344728)
chr1 (447-497)||(368367-368417)
[»] chr4 (5 HSPs)
chr4 (16-126)||(9581989-9582099)
chr4 (16-126)||(9587684-9587794)
chr4 (18-78)||(37897954-37898014)
chr4 (19-76)||(9569203-9569260)
chr4 (20-84)||(20426615-20426679)
[»] chr2 (5 HSPs)
chr2 (453-499)||(27717421-27717467)
chr2 (461-499)||(34324901-34324939)
chr2 (30-78)||(7488773-7488821)
chr2 (20-84)||(44937806-44937870)
chr2 (18-78)||(7498901-7498961)
[»] chr8 (4 HSPs)
chr8 (325-384)||(3368153-3368212)
chr8 (20-78)||(3367860-3367918)
chr8 (461-499)||(3368291-3368329)
chr8 (461-499)||(4027477-4027515)
[»] scaffold0054 (1 HSPs)
scaffold0054 (18-78)||(33476-33536)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 42637357 - 42637568
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgtgtttgcaaaatttgaaaccaacgcaattgaccc 117  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||     
T  42637357 tgaagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagttgtgtttgcaaaattcgaaatcaacgcaattgaccg 42637456  T
Q  118 atttaacactgctaaatatccataacgaatatcattcctgtttgtcggtgtagatgttgtaacaaacatctcagtggtcaagttaaatgacacgagatcc 217  Q
    |||||||| |||||| |||| ||||  |||||||||| |||||||| || |||||||||| |||||||| ||||| ||||||||||||||||||||||      
T  42637457 atttaacattgctaagtatctataatcaatatcattcgtgtttgtcagtatagatgttgtcacaaacatttcagtagtcaagttaaatgacacgagataa 42637556  T
Q  218 ttttcattgtat 229  Q
    |||| |||||||    
T  42637557 tttttattgtat 42637568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 258 - 504
Target Start/End: Original strand, 42637570 - 42637804
Alignment:
Q  258 ttttactcaaccaatgacacattccatccatgtatacacgaccatccgcattatatggagaacatgcaggcatatctacatgaagctttctccaagagtt 357  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||  || | |||| | ||||| ||| |||||||||||||| ||||||||||||||||||    
T  42637570 ttttactcaaccaatgacacactccatccatgtacacatgaccgcccactttatgtcgagaagatgaaggcatatctacatcaagctttctccaagagtt 42637669  T
Q  358 gctttttagacaatatatctcccacaaagaataattagtatctttcaaagttccatctaccatggcgtaggttgtaggagaaaatactgcatgtcgaatc 457  Q
    |||||||||||| |||||||||||||||||||||  ||||| |||            | |||||  | | ||||||||| ||| || |||||||||||||    
T  42637670 gctttttagacagtatatctcccacaaagaataaggagtattttt------------tcccatgttgcatgttgtaggataaattattgcatgtcgaatc 42637757  T
Q  458 attttatagttatctctaacatggtcataaccaaatccatgatgatg 504  Q
    |  |||||||||| ||||| ||||||||||||||| |||||| ||||    
T  42637758 aacttatagttatttctaatatggtcataaccaaacccatgaagatg 42637804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 40545166 - 40545117
Alignment:
Q  30 tccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagtt 79  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  40545166 tccatgattccttcacaccaacttcacccaaaattgatatgtgaaaagtt 40545117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 42629932 - 42629991
Alignment:
Q  325 aggcatatctacatgaagctttctccaagagttgctttttagacaatatatctcccacaa 384  Q
    |||||||| || || ||| |||||||||||||||||||| ||||||||||||||||||||    
T  42629932 aggcatatttatatcaagttttctccaagagttgcttttaagacaatatatctcccacaa 42629991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 31789583 - 31789522
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagtt 79  Q
    |||||||| || |||||||||||||||  ||||||||||||||||||||||| || ||||||    
T  31789583 tgaagagtttgatccatgattccttcacaccaacttcacccaaaattgatatatggaaagtt 31789522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 9575748 - 9575808
Alignment:
Q  326 ggcatatctacatgaagctttctccaagagttgctttttagacaatatatctcccacaaag 386  Q
    |||||||||| ||  || ||||||||| |||| ||||||||||||||||||||||||||||    
T  9575748 ggcatatctatatcgagttttctccaatagttactttttagacaatatatctcccacaaag 9575808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 15807728 - 15807783
Alignment:
Q  20 aagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaa 75  Q
    |||||| |||||||||| || || | ||||||||||||||||||||||||||||||    
T  15807728 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 15807783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 40549336 - 40549277
Alignment:
Q  20 aagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagtt 79  Q
    |||||| || |||||||||||||||  || ||||||||||||||||||||||||| ||||    
T  40549336 aagagtttgatccatgattccttcacaccgacttcacccaaaattgatatgtgaatagtt 40549277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 30651170 - 30651132
Alignment:
Q  461 ttatagttatctctaacatggtcataaccaaatccatga 499  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  30651170 ttatagtcatctctaacatggtcataaccaaatccatga 30651132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 31777516 - 31777478
Alignment:
Q  461 ttatagttatctctaacatggtcataaccaaatccatga 499  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  31777516 ttatagtcatctctaacatggtcataaccaaatccatga 31777478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 37512946 - 37512892
Alignment:
Q  30 tccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgt 84  Q
    ||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||    
T  37512946 tccatgatttcttcccaccaacctcacccaaaattgatatgtgaaaagttgttgt 37512892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 41859671 - 41859772
Alignment:
Q  19 gaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgtgtttgcaaaatttgaaaccaacgcaattgaccca 118  Q
    ||||||| || ||||||| || || |||||||||||||| |||| |||||| |||||||| ||  | |||||| || |||||||| | |||||||| |||    
T  41859671 gaagagtttgatccatgactctttaatcccaacttcacctaaaactgatatatgaaaagtagtcatctttgcataacttgaaacccatgcaattgatcca 41859770  T
Q  119 tt 120  Q
    ||    
T  41859771 tt 41859772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 42629649 - 42629702
Alignment:
Q  30 tccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttg 83  Q
    ||||||| |||||||  || |||||||||||||||||||| |||||||||||||    
T  42629649 tccatgactccttcactccgacttcacccaaaattgatatatgaaaagttgttg 42629702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 32032932 - 32032881
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatat 69  Q
    |||||||| || |||||||||||||||  |||||||||||| ||||||||||    
T  32032932 tgaagagtttgatccatgattccttcacaccaacttcaccccaaattgatat 32032881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 16487064 - 16487118
Alignment:
Q  327 gcatatctacatgaagctttctccaagagttgctttttagacaatatatctccca 381  Q
    ||||||| |||| ||| ||||||||||||||| || |||||| ||||||||||||    
T  16487064 gcatatcgacatcaagttttctccaagagttgtttcttagactatatatctccca 16487118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 499
Target Start/End: Original strand, 9575874 - 9575926
Alignment:
Q  447 catgtcgaatcattttatagttatctctaacatggtcataaccaaatccatga 499  Q
    |||||||||| | |||||||| || | |||| |||||||||||||||||||||    
T  9575874 catgtcgaattactttatagtcatatgtaacttggtcataaccaaatccatga 9575926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 42630061 - 42630109
Alignment:
Q  451 tcgaatcattttatagttatctctaacatggtcataaccaaatccatga 499  Q
    |||||||| ||| |||| |||| |||| |||||||||||||||||||||    
T  42630061 tcgaatcactttgtagtcatctttaacttggtcataaccaaatccatga 42630109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 5162513 - 5162455
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaa 76  Q
    |||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||    
T  5162513 tgaagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaa 5162455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 2703389 - 2703337
Alignment:
Q  447 catgtcgaatcattttatagttatctctaacatggtcataaccaaatccatga 499  Q
    ||||| |||| | |||||||| ||| |||||||||||||||||||||||||||    
T  2703389 catgttgaatgactttatagtcatccctaacatggtcataaccaaatccatga 2703337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 32744869 - 32744977
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgtgtttgcaaaatttgaaaccaacgcaattgaccc 117  Q
    |||||||  ||||||||||||| ||||| ||||  ||||||| |||||||||||||||||| || || ||| || ||| ||| | ||| ||||| |||||    
T  32744869 tgaagagattggtccatgattctttcataccaatctcacccataattgatatgtgaaaagtagtcgtcttttcataatatgagatcaatgcaatggaccc 32744968  T
Q  118 atttaacac 126  Q
    |||||||||    
T  32744969 atttaacac 32744977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 29145363 - 29145307
Alignment:
Q  20 aagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaa 76  Q
    |||||| ||||||||||||||||||| || | | |||||||||||||||||||||||    
T  29145363 aagagtttggtccatgattccttcatacctaatccacccaaaattgatatgtgaaaa 29145307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 29131368 - 29131310
Alignment:
Q  27 tggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgtg 85  Q
    ||||||| ||||| || || |||| ||||||||||||||||||||||||||| ||||||    
T  29131368 tggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaaagtagttgtg 29131310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 32740722 - 32740791
Alignment:
Q  17 atgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgtgt 86  Q
    ||||||||| ||||||| |||||||| || || | ||||||||||||||||| | ||||||| |||||||    
T  32740722 atgaagagtttggtccacgattcctttatgccgaattcacccaaaattgatacgagaaaagtagttgtgt 32740791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29137351 - 29137291
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||  ||||||||| ||||||||| ||||||||||||||||| ||||  ||||||||    
T  29137351 tgaagagcctggtccatgtttccttcataccaacttcacccaaaatagatacatgaaaagt 29137291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 29012902 - 29012843
Alignment:
Q  17 atgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaa 76  Q
    ||||||||| ||||||||||||||||||  || |  || |||||||||||||||||||||    
T  29012902 atgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaaa 29012843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 23216418 - 23216466
Alignment:
Q  451 tcgaatcattttatagttatctctaacatggtcataaccaaatccatga 499  Q
    |||||| || ||||||| || | ||||||||||||||||||||||||||    
T  23216418 tcgaatgatcttatagtcatttataacatggtcataaccaaatccatga 23216466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29124217 - 29124157
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||  ||||||||||||||||||| || |  ||||||| ||||||||| ||||||||    
T  29124217 tgaagagcttggtccatgattccttcataccgatctcacccagaattgatatctgaaaagt 29124157  T

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Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 10545 - 10484
Alignment:
Q  17 atgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    ||||||||| | ||||| || |||||||  ||||||||||||||||||||||||||||||||    
T  10545 atgaagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaaagt 10484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 17601 - 17649
Alignment:
Q  451 tcgaatcattttatagttatctctaacatggtcataaccaaatccatga 499  Q
    |||||| | ||| |||| |||||||||||||||||||||||||||||||    
T  17601 tcgaatgactttgtagtcatctctaacatggtcataaccaaatccatga 17649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 16246 - 16294
Alignment:
Q  30 tccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||    
T  16246 tccatgattccttcttaccaatttcacccaaaattgatatgtgaaaagt 16294  T

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Target: scaffold0613 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 257 - 206
Alignment:
Q  27 tggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    ||||||||||||| ||| | |||| |||||||||||||||||||||||||||    
T  257 tggtccatgattcattctttccaatttcacccaaaattgatatgtgaaaagt 206  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 42446407 - 42446348
Alignment:
Q  17 atgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaa 76  Q
    |||| |||| |||||||||||||||| ||  ||| |||||||||||||||||||||||||    
T  42446407 atgacgagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaaa 42446348  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 5438321 - 5438369
Alignment:
Q  30 tccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  5438321 tccatgattccttcataccaagttcacccaaaactgatatatgaaaagt 5438369  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 5447297 - 5447345
Alignment:
Q  30 tccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  5447297 tccatgattccttcataccaagttcacccaaaactgatatatgaaaagt 5447345  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 25627801 - 25627763
Alignment:
Q  461 ttatagttatctctaacatggtcataaccaaatccatga 499  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  25627801 ttatagtcatctctagcatggtcataaccaaatccatga 25627763  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 368865 - 368798
Alignment:
Q  17 atgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgt 84  Q
    ||||||||| || |||||||||||||||  |||| |||||| | |||||||||||||||||| |||||    
T  368865 atgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagttgt 368798  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 344728 - 344684
Alignment:
Q  454 aatcattttatagttatctctaacatggtcataaccaaatccatg 498  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||    
T  344728 aatcactttatagtcatctctgacatggtcataaccaaatccatg 344684  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 368417 - 368367
Alignment:
Q  447 catgtcgaatcattttatagttatctctaacatggtcataaccaaatccat 497  Q
    |||||| ||| |||||||||| |||||||||||  ||||||||||||||||    
T  368417 catgtctaataattttatagtcatctctaacataatcataaccaaatccat 368367  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 9581989 - 9582099
Alignment:
Q  16 catgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgtgtttgcaaaatttgaaaccaacgcaattgac 115  Q
    |||||||||| |||||||||| ||||| || ||   ||||||||||||||||||||||||| |||| || | | ||  || ||| | ||| ||||| |||    
T  9581989 catgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggac 9582088  T
Q  116 ccatttaacac 126  Q
    |||||||||||    
T  9582089 ccatttaacac 9582099  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 9587684 - 9587794
Alignment:
Q  16 catgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgtgtttgcaaaatttgaaaccaacgcaattgac 115  Q
    |||||||||| |||||||||| ||||| || ||   ||||||||||||||||||||||||| |||| || | | ||  || ||| | ||| ||||| |||    
T  9587684 catgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggac 9587783  T
Q  116 ccatttaacac 126  Q
    |||||||||||    
T  9587784 ccatttaacac 9587794  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 37898014 - 37897954
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||| ||||||| ||||||||||| |||| ||| ||||||| ||||| |||||||||    
T  37898014 tgaagagtttggtccacgattccttcataccaagttcgcccaaaactgatacgtgaaaagt 37897954  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 9569260 - 9569203
Alignment:
Q  19 gaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaa 76  Q
    ||||||| ||||||| |||||||| || |||  |||||||||||| ||||||||||||    
T  9569260 gaagagtttggtccacgattccttaatgccatattcacccaaaatcgatatgtgaaaa 9569203  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 20426679 - 20426615
Alignment:
Q  20 aagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgt 84  Q
    |||||| ||||||| ||||||||||  || | |||||  |||||||||||||||||||| |||||    
T  20426679 aagagtttggtccacgattccttcacgccgagttcacttaaaattgatatgtgaaaagtagttgt 20426615  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 27717421 - 27717467
Alignment:
Q  453 gaatcattttatagttatctctaacatggtcataaccaaatccatga 499  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||    
T  27717421 gaatgattttatagtcatctctaacatggtcatagccaaatccatga 27717467  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 34324939 - 34324901
Alignment:
Q  461 ttatagttatctctaacatggtcataaccaaatccatga 499  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34324939 ttatagtcatctctaacatggtcataaccaaatccatga 34324901  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 7488773 - 7488821
Alignment:
Q  30 tccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||||| ||||  |||| |||||||||||||||||||||||||||    
T  7488773 tccatgattctttcacaccaatttcacccaaaattgatatgtgaaaagt 7488821  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 44937806 - 44937870
Alignment:
Q  20 aagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagttgttgt 84  Q
    |||||| | ||||||||||| ||||  || | ||||||||||||||||||||||||||| |||||    
T  44937806 aagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtagttgt 44937870  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 7498901 - 7498961
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||| | ||||||||||| ||||   ||| |||| ||||||||||||||||||||||    
T  7498901 tgaagagtttagtccatgattctttcacgtcaatttcatccaaaattgatatgtgaaaagt 7498961  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 3368153 - 3368212
Alignment:
Q  325 aggcatatctacatgaagctttctccaagagttgctttttagacaatatatctcccacaa 384  Q
    ||||||||||| || ||  ||||||||||| || ||||||||| ||||||||||||||||    
T  3368153 aggcatatctatatcaacttttctccaagaattcctttttagagaatatatctcccacaa 3368212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 3367860 - 3367918
Alignment:
Q  20 aagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||| |||||||||| || || | |||||||||||| |||||||||||||| |||||    
T  3367860 aagagtttggtccatgactctttgaccccaacttcacctaaaattgatatgtggaaagt 3367918  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 499
Target Start/End: Original strand, 3368291 - 3368329
Alignment:
Q  461 ttatagttatctctaacatggtcataaccaaatccatga 499  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  3368291 ttatagtcatctctaacttggtcataaccaaatccatga 3368329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 4027515 - 4027477
Alignment:
Q  461 ttatagttatctctaacatggtcataaccaaatccatga 499  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  4027515 ttatagtcatctctaacacggtcataaccaaatccatga 4027477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 33476 - 33536
Alignment:
Q  18 tgaagagtgtggtccatgattccttcatcccaacttcacccaaaattgatatgtgaaaagt 78  Q
    |||||||| ||||||| |||||||| || || | |||||||||||||| ||||| ||||||    
T  33476 tgaagagtttggtccacgattccttaatgccgagttcacccaaaattgctatgtcaaaagt 33536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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