View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_13 (Length: 504)

Name: NF19951_low_13
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_13
NF19951_low_13
[»] chr2 (6 HSPs)
chr2 (319-487)||(42836644-42836812)
chr2 (142-173)||(23889595-23889626)
chr2 (142-173)||(23893671-23893702)
chr2 (148-201)||(5568385-5568439)
chr2 (103-201)||(11361771-11361868)
chr2 (142-171)||(23899196-23899225)
[»] chr1 (2 HSPs)
chr1 (67-201)||(29500326-29500457)
chr1 (103-171)||(31123283-31123351)
[»] chr6 (1 HSPs)
chr6 (67-201)||(14526792-14526926)
[»] chr8 (2 HSPs)
chr8 (70-201)||(40499441-40499572)
chr8 (103-156)||(39037402-39037456)
[»] chr7 (2 HSPs)
chr7 (128-201)||(12489534-12489606)
chr7 (102-171)||(43016466-43016535)
[»] chr3 (2 HSPs)
chr3 (103-179)||(35495329-35495405)
chr3 (142-173)||(35596328-35596359)
[»] chr4 (2 HSPs)
chr4 (103-171)||(23112156-23112224)
chr4 (142-173)||(37877979-37878010)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 319 - 487
Target Start/End: Complemental strand, 42836812 - 42836644
Alignment:
Q  319 atcaaaatcaataattttatttaaaatttcatnnnnnnnttgttgttcctaatttgtaatcattatcgcaataagaaaagtggacaaacggggtggtcca 418  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42836812 atcaaaatcaataattttatttaaaatttcataaaaaaattgttgttcctaatttataatcattatcgcaataagaaaagtggacaaacggggtggtcca 42836713  T
Q  419 tctacccgtctaaatgctagtaaaataaaaaatatataaaggctgacttgtcaataataataggataag 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42836712 tctacccgtctaaatgctagtaaaataaaaaatatataaaggctgacttgtcaataataataggataag 42836644  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 23889595 - 23889626
Alignment:
Q  142 tacccctgccacatcagcagtggtacaaagag 173  Q
    ||||||||||||||||||||||||||||||||    
T  23889595 tacccctgccacatcagcagtggtacaaagag 23889626  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 23893671 - 23893702
Alignment:
Q  142 tacccctgccacatcagcagtggtacaaagag 173  Q
    ||||||||||||||||||||||||||||||||    
T  23893671 tacccctgccacatcagcagtggtacaaagag 23893702  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 5568385 - 5568439
Alignment:
Q  148 tgccacatcagcagtggtacaaagaggtgtatgaaaa-agagtggtctatgtatc 201  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||  |||||||    
T  5568385 tgccacatcagcagtggtacaaaggggtgtattaaaagagagtggtacatgtatc 5568439  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 11361771 - 11361868
Alignment:
Q  103 aaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggtacaaagaggtgtatgaaaaagagtggtctatgtatc 201  Q
    |||||| ||||||| || ||  |||||||| ||||| |||  |||||||||||||||||||||| |||| |||| || |  || |||||||||||||||    
T  11361771 aaactatcaaactacccatattgcgtgaaactaccaaactgtccctgccacatcagcagtggtataaaggggtggat-attaaaagtggtctatgtatc 11361868  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 23899196 - 23899225
Alignment:
Q  142 tacccctgccacatcagcagtggtacaaag 171  Q
    ||||||||||||||||||||||||||||||    
T  23899196 tacccctgccacatcagcagtggtacaaag 23899225  T

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Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 29500326 - 29500457
Alignment:
Q  67 acggatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggta 166  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||   ||||||||    
T  29500326 acggatctgcgaacagagaagaggaagagattgtgaaaactaccaaactatccctaacacgtgaaattaccaaactacccctgccacat---cagtggta 29500422  T
Q  167 caaagaggtgtatgaaaaagagtggtctatgtatc 201  Q
    ||||||| |||||| ||||||||||||||||||||    
T  29500423 caaagagatgtatggaaaagagtggtctatgtatc 29500457  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 31123351 - 31123283
Alignment:
Q  103 aaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggtacaaag 171  Q
    |||||||||||||| |||||  | |||||||||||| |||||| ||||||||||||||||| |||||||    
T  31123351 aaactaccaaactacccctattgtgtgaaattaccaaactacctctgccacatcagcagtgatacaaag 31123283  T

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Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 14526792 - 14526926
Alignment:
Q  67 acggatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggta 166  Q
    ||||||||| |||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||  |||||| || |||||    
T  14526792 acggatctgtgaacagagaagaggaagagattgcgaaaactatcaaactatcactagcgcgtgaaattaccaaactacccctgtaacatcaacactggta 14526891  T
Q  167 caaagaggtgtatgaaaaagagtggtctatgtatc 201  Q
    ||||| |||||||  ||||||||||||||||||||    
T  14526892 caaaggggtgtatagaaaagagtggtctatgtatc 14526926  T

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Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 40499572 - 40499441
Alignment:
Q  70 gatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggtacaa 169  Q
    |||||| ||||  ||||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||| |||    
T  40499572 gatctgtgaacaaagaagagaaagagattgtaaaaactaccaaactatccctatcgcgtgaaattatcaaactacccctgccacatcagcagtggtgcaa 40499473  T
Q  170 agaggtgtatgaaaaagagtggtctatgtatc 201  Q
    || || ||||  ||||||||||||||||||||    
T  40499472 aggggcgtatagaaaagagtggtctatgtatc 40499441  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 39037402 - 39037456
Alignment:
Q  103 aaactaccaaactatccct-agcgcgtgaaattaccacactacccctgccacatc 156  Q
    |||||||||||||| |||| | ||||||||||||||| ||||||| |||||||||    
T  39037402 aaactaccaaactaccccttatcgcgtgaaattaccaaactacccttgccacatc 39037456  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 12489606 - 12489534
Alignment:
Q  128 tgaaattaccacactacccctgccacatcagcagtggtacaaagaggtgtatgaaaaagagtggtctatgtatc 201  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |  || |||||||||||||||    
T  12489606 tgaaattaccaaactacccctgccacatcagcagtggtacaaaggggtgtat-attaaaagtggtctatgtatc 12489534  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 43016535 - 43016466
Alignment:
Q  102 aaaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggtacaaag 171  Q
    ||||||||||||||| |||||||   |||||||| ||  |||||||||||||||||||||||||||||||    
T  43016535 aaaactaccaaactacccctagcatatgaaattagcaatctacccctgccacatcagcagtggtacaaag 43016466  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 35495405 - 35495329
Alignment:
Q  103 aaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggtacaaagaggtgtat 179  Q
    |||||||||||||| | |||  || ||||||||||| ||||||||| |||||||||||||||| ||||| |||||||    
T  35495405 aaactaccaaactacctctattgcatgaaattaccaaactacccctaccacatcagcagtggtgcaaaggggtgtat 35495329  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 35596328 - 35596359
Alignment:
Q  142 tacccctgccacatcagcagtggtacaaagag 173  Q
    ||||||||||||||||||||||||||||||||    
T  35596328 tacccctgccacatcagcagtggtacaaagag 35596359  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 23112224 - 23112156
Alignment:
Q  103 aaactaccaaactatccctagcgcgtgaaattaccacactacccctgccacatcagcagtggtacaaag 171  Q
    |||||||||||||| | |||  ||||||||||| || || |||||| ||||||||||||||||||||||    
T  23112224 aaactaccaaactacctctattgcgtgaaattatcaaaccacccctaccacatcagcagtggtacaaag 23112156  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 37878010 - 37877979
Alignment:
Q  142 tacccctgccacatcagcagtggtacaaagag 173  Q
    ||||||||||||||||||||||||||||||||    
T  37878010 tacccctgccacatcagcagtggtacaaagag 37877979  T

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