View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_15 (Length: 496)
Name: NF19951_low_15
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 27848220 - 27848609
Alignment:
| Q |
18 |
agaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaaggaggtgatggatatggtgtttctcnnnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
27848220 |
agaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaaggaggtgatggatatggtgtttctcgaggaggaggaggagg-- |
27848317 |
T |
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| Q |
118 |
nnnncgaagcaggcggtggatatggtcctgatggaccaggtacgggaagtggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcc |
217 |
Q |
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| T |
27848318 |
----cgaagcaggcggtggatatggtcctgatggaccaggtacgggaagtggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcc |
27848413 |
T |
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| Q |
218 |
tggggtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttcctggtggaccg |
317 |
Q |
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| T |
27848414 |
tggggtaggaggcggtgaatgtgtcccaggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttcctggtggaccg |
27848513 |
T |
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| Q |
318 |
ggtgaaggaggtggtg---atattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaaggaggtggtg---atgttcctg |
411 |
Q |
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| T |
27848514 |
ggtgaaggagttggtggacatgttcctggtggaggagac---------ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctg |
27848604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 294 - 465
Target Start/End: Original strand, 27848589 - 27848760
Alignment:
| Q |
294 |
ggtggatatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaag |
393 |
Q |
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| T |
27848589 |
ggtggacatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggtgatgtaggtggtgggtatgttcctggtggaccgggcgaag |
27848688 |
T |
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| Q |
394 |
gaggtggtgatgttcctggtggaggaggcaaaggaggcgttgggtatgttcctgttagacctggtgaaggaa |
465 |
Q |
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| T |
27848689 |
gaggtggtgatgttcctggtgaaggagggaaaggaggcgttgggtatgttcctgttggacctggtgaaggaa |
27848760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 27848658 - 27848785
Alignment:
| Q |
294 |
ggtggatatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaag |
393 |
Q |
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| T |
27848658 |
ggtgggtatgttcctggtggaccgggcgaaggaggtggtgatgttcctggtgaaggagggaaaggaggcgttgggtatgttcctgttggacctggtgaag |
27848757 |
T |
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| Q |
394 |
gaggtggtgatgttcctggtggaggagg |
421 |
Q |
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| T |
27848758 |
gaagtggtgatggtggaggtggaggagg |
27848785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 27848490 - 27848550
Alignment:
| Q |
363 |
ggtgggtatgttcctggtggaccgggcaaaggaggtggtg---atgttcctggtggaggag |
420 |
Q |
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| T |
27848490 |
ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggag |
27848550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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