View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_16 (Length: 484)
Name: NF19951_low_16
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 37811304 - 37810851
Alignment:
| Q |
16 |
atggaagagtaaatttggagaagctcaagcaaaagaacaaaaggacaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccgaactta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37811304 |
atggaagagtaaatttggagaagctcaagcaaaagaacagaaggacaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccgaactta |
37811205 |
T |
|
| Q |
116 |
ataaaaattacagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgagtggtgggacgtggaacttctgcattctggaaattatg |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37811204 |
atagaaattacagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgggtggtgggacgtggaacttctgcattctggaaattatg |
37811105 |
T |
|
| Q |
216 |
gcgacattgccaatggtactata--gatgaaggcaatatgaaaatggaagaattcaacttttatgtggaaactcctcggcctattgaaccgcctgctgag |
313 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37811104 |
gcgacattgccaatggtactatatagatgaaggcaatatgaaaatggaagaattcaacttttatgtggaaactcctcggcctattgaaccgcctgctgag |
37811005 |
T |
|
| Q |
314 |
cccgcccctccaccacctcaacttatcaagccaactaaacaggagcagaaaaaactaaggacccaaaggcgtatagctaaggagaaaaagcgacaggaga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37811004 |
cccgcccctccaccacctcaacttatcaagccaactaaacaggagcagaagaaactaaggacccaaaggcgtatagctaaggagaaaaagcgacaggaga |
37810905 |
T |
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| Q |
414 |
tgattagacagggtgtcatagaaccgccaaaaccaaaggtcaagatgagtaatt |
467 |
Q |
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| T |
37810904 |
tgattagacagggtttcatagaaccgccaaaaccaaaggtcaagatgagtaatt |
37810851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 183 - 467
Target Start/End: Complemental strand, 52353004 - 52352720
Alignment:
| Q |
183 |
gggacgtggaacttctgcattctggaaattatggcgacattgccaatggtactatagatgaaggcaatatgaaaatggaagaattcaacttttatgtgga |
282 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||| || ||||||| |||||||| |
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| T |
52353004 |
gggacgtggcacttctgcattctggaaattatggtgacattgccaacggtacaatagacgaaggcaatataaaaatggaaaaaatcaacttctatgtgga |
52352905 |
T |
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| Q |
283 |
aactcctcggcctattgaaccgcctgctgagcccgcccctccaccacctcaacttatcaagccaactaaacaggagcagaaaaaactaaggacccaaagg |
382 |
Q |
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| ||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||| ||||||||| |||||||| |||||||||||||||||| |
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| T |
52352904 |
acatcctcggcctattgagccgcctgctgagcctgcccctccaccacctcaacctctcaagctaactaaacaagagcagaagaaactaaggacccaaagg |
52352805 |
T |
|
| Q |
383 |
cgtatagctaaggagaaaaagcgacaggagatgattagacagggtgtcatagaaccgccaaaaccaaaggtcaagatgagtaatt |
467 |
Q |
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| T |
52352804 |
cgtatagctaaggagaaagagcgacaggagatgattagacagggtgtcatagaaccgccaaaaccaaaggtcaagatgagtaatt |
52352720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 52355198 - 52355035
Alignment:
| Q |
21 |
agagtaaatttggagaagctcaagcaaaagaacaaaaggacaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccgaacttaataaa |
120 |
Q |
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||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52355198 |
agagtaaatttggagaagctcaagcaaaagagcagaaggccaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccgaacttaataga |
52355099 |
T |
|
| Q |
121 |
aattacagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgagtggtgg |
184 |
Q |
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| T |
52355098 |
aattacagagagagttgtaatgaaagcaaaactgaaggaccgtattccagatattgagtggtgg |
52355035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 125 - 410
Target Start/End: Complemental strand, 17199881 - 17199596
Alignment:
| Q |
125 |
acagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgagtggtgggacgtggaacttctgcattctggaaattatggcgacattg |
224 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||| |
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| T |
17199881 |
acagagagagttgtaatgaaagcaaaactgaaggacccaattccagatattgagtggtgggacatggcacttctgcattccggaaattatcctgacattg |
17199782 |
T |
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| Q |
225 |
ccaatggtactatagatgaaggcaatatgaaaatggaagaattcaacttttatgtggaaactcctcggcctattgaaccgcctgctgagcccgcccctcc |
324 |
Q |
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|||| |||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17199781 |
ccaacggtactatagatgaaggcgatctgaaaatggaaaaattcgacttttatgtggaacatcctcggcctattgaaccgcctgctgagcccgcccctcc |
17199682 |
T |
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| Q |
325 |
accacctcaacttatcaagccaactaaacaggagcagaaaaaactaaggacccaaaggcgtatagctaaggagaaaaagcgacagg |
410 |
Q |
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||||||||||| | ||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||| |
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| T |
17199681 |
accacctcaacctctcaagccaactaaacaggagcagaagaaactaaggactcaagggcgtatagctaaggagaaagagcgacagg |
17199596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 467
Target Start/End: Complemental strand, 17199588 - 17199554
Alignment:
| Q |
433 |
agaaccgccaaaaccaaaggtcaagatgagtaatt |
467 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
17199588 |
agaaccgccaaaaccaaagatcaagatgagtaatt |
17199554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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