View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_17 (Length: 465)
Name: NF19951_low_17
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 290 - 442
Target Start/End: Original strand, 41348176 - 41348328
Alignment:
| Q |
290 |
gttcaaaactaaacaaattttatcgttagattcaaagtcgattttatgatttttggtgtttcnnnnnnntcaataaagttacccgtgtaaaaattagcac |
389 |
Q |
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| T |
41348176 |
gttcaaaactaaacaaattttatcgttagattcaaagtcgattttatgatttttggtgtttcaaaaaaatcaataaagttacccttgtaaaaattagcac |
41348275 |
T |
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| Q |
390 |
atgttacaaatagtacaaaacccaaactctcacttttgattttgaaggaggag |
442 |
Q |
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| T |
41348276 |
atgttacaaatagtacaaaacccaaactctcacttttgattttgaagaaggag |
41348328 |
T |
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Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 41347957 - 41348062
Alignment:
| Q |
1 |
cctctagttctttcatgcaagatactacacctactgtaacattatactagtacttttataacaaaaattattatatctcattgagtatttaatttctgtg |
100 |
Q |
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| T |
41347957 |
cctctagttctttcatgcaagatac---acctactgtaacattatactagtacttctataacaaaaattattatatctcattgagtatttaatttctgtg |
41348053 |
T |
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| Q |
101 |
tgccctatt |
109 |
Q |
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| T |
41348054 |
tgctctatt |
41348062 |
T |
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