View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_18 (Length: 463)
Name: NF19951_low_18
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_18 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 49170758 - 49171218
Alignment:
| Q |
8 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaagg |
107 |
Q |
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| T |
49170758 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaagg |
49170857 |
T |
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| Q |
108 |
agtggcttgattgacttatgaaaaggggtttgtttcgcaagaatatagtaagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaagg |
207 |
Q |
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| T |
49170858 |
agtggcttgattgacttatgaaaaggggtttgtgtcgcaagaatataataagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaagg |
49170957 |
T |
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| Q |
208 |
accacatgccaaa-----taatcacaaatttatgttttttcttttctggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacactt |
302 |
Q |
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| T |
49170958 |
accacatgccaaagagtataatcacaaatttatgttttttcttttctggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacactt |
49171057 |
T |
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| Q |
303 |
ttcttgctcaattgtgattggaaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
402 |
Q |
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| T |
49171058 |
ttcttgctcaattgtgattggcaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
49171157 |
T |
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| Q |
403 |
aacaaagtggtgattaattatattatggcactatacagatcttttagaggaggtgagcgtg |
463 |
Q |
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| T |
49171158 |
aacaaagtggtgattaattatattatggcactataaagatcttttagaggaggtgagcgtg |
49171218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 8421345 - 8420897
Alignment:
| Q |
19 |
atttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgat |
118 |
Q |
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| T |
8421345 |
atttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgat |
8421246 |
T |
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| Q |
119 |
tgacttatgaaaaggggtttgtttcgcaagaatatagtaagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgcca |
218 |
Q |
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| T |
8421245 |
tgacttatgaaaaggggtttgtgtcgcaagaattgagtaaggtcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgcca |
8421146 |
T |
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| Q |
219 |
aa-----taatcacaaatttatgttttttcttttctggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacacttttcttgctcaa |
313 |
Q |
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| T |
8421145 |
aagagtataatcacaaatttatgttttt-cttttcaggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacacttttcttgctcaa |
8421047 |
T |
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| Q |
314 |
ttgtgattggaaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaaaacaaagtggt |
413 |
Q |
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| T |
8421046 |
ttgtgattggcaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaaaacaaagtggt |
8420947 |
T |
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| Q |
414 |
gattaattatattatggcactatacagatcttttagaggaggtgagcgtg |
463 |
Q |
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| T |
8420946 |
gattaattatattatggcactatacagatcttttagaggaggtgagcgtg |
8420897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 36732736 - 36732895
Alignment:
| Q |
42 |
taaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttatgaaaaggggtttgtt |
141 |
Q |
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| T |
36732736 |
taaaaaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaatgagtggcttgatagacttatgataagggg-ctgtg |
36732834 |
T |
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| Q |
142 |
tcgcaagaatatagtaa--gggcttggttgtctctaaaactttgttgtttgcagatagtaa |
200 |
Q |
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| T |
36732835 |
tcgcaaggatatagtaaaggggcatggttgtttctagaactttgttgtttgtagatagtaa |
36732895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 24422996 - 24422915
Alignment:
| Q |
8 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattt |
90 |
Q |
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| T |
24422996 |
attattctaggatt-agagattggaatatgggagtaagcaagatagaaaggacatagagtataccttagactcccaagaattt |
24422915 |
T |
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