View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_2 (Length: 792)
Name: NF19951_low_2
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 10 - 776
Target Start/End: Complemental strand, 43382573 - 43381827
Alignment:
| Q |
10 |
tccaagaatatgtaagatatgagaaaaatacagaataactagtatatgagtgtggtaaaatcttattctcaaacggggtagggtagggtcgtacagtcat |
109 |
Q |
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||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
43382573 |
tccaaaaaaatgtaagatatgagaaaa-tacagaataactagtatatgagtgtggtaaaatcttattttcaaacgggatagggtagggtcgtacagtcat |
43382475 |
T |
|
| Q |
110 |
accattttaagagtacaaatagttctacaatctatgtgttggtgtgaacaagtaatattcaaaagttatctacatttgtcaacatgctcaagttgaagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43382474 |
accattttaagagtacaaatagttctacaatcaatgtgttggtgtgaacaagtaatattcaaaagttatctacatttgtcaacatgctcaagttga---- |
43382379 |
T |
|
| Q |
210 |
ttatccttcaaattgaagtttctacaaaatctgattaaaaatataataatgaccaaaagatataaaatgtttgatttgtttgtaattacagacaannnnn |
309 |
Q |
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| T |
43382378 |
----------------agtttctacaaaatctgattaaaaatataataatgaccaaaagatataaaatgtctgatttgtttgtaattacagacaattttt |
43382295 |
T |
|
| Q |
310 |
nnnaaaatgttggggaatnnnnnnnn-tattattaattaaagtgacattaaagatcattgaacaaacgactcaagaaatttgaaatttatcacttgagat |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43382294 |
tttaaaatgttggggaattaaaaaaaatattattaattaaagtgacattaaagatcattgaacaaacgactcaagaaatttgaaatttatcacttcagat |
43382195 |
T |
|
| Q |
409 |
taagacatcaaactcttacaacttacgctgacattttatgacattgaaagatattgttagattagtgtataatgaatcttcaaaatttgtatagacatat |
508 |
Q |
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| T |
43382194 |
taagacatcaaactcatacaacttatgccgacattttatgacactgaaagatattgttagattagtgtataatgaatcttcaaaatttgtatagacatat |
43382095 |
T |
|
| Q |
509 |
tttgacccttaacatttgttttgcatcaaaagatttaacaaagttttcacatattgctaaattgagctacaaatgtgtttgtcaatgttgggaacaacac |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43382094 |
tttgacccttaacatttgttttgcatcaaaagatttaacaaagttttcacatattgctaaattgagctacaaatgtgtttgtctatgttgggaacaacac |
43381995 |
T |
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| Q |
609 |
cttcatgaaacactctagtttggttgtttgatgagcttgtatcctactaagattaagttgttctgtcctgagtaaggtatttgagttgtaccataatctt |
708 |
Q |
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| T |
43381994 |
cttcatgaaacactctagtttggttgtttgatgagcttgtatcctactaagattaagttgttctgtcctgagtaaggtatttgagttgtaccataatctt |
43381895 |
T |
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| Q |
709 |
tgtagtggcattgaggattccatagagttaaatagttagttgttccttgatgtacgcatagttgatac |
776 |
Q |
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| T |
43381894 |
tgtagtggcattgaggattccctagagttaaatagttagttgttccttgatgtacgtatagttgatac |
43381827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 671 - 776
Target Start/End: Complemental strand, 25871647 - 25871546
Alignment:
| Q |
671 |
ctgtcctgagtaaggtatttgagttgtaccataatctttgtagtggcattgaggattccatagagttaaatagttagttgttccttgatgtacgcatagt |
770 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||| |
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| T |
25871647 |
ctgtcctgattaaggtatttgagttgtaccataatctttgtagtggcattgaggattccctcgaattaaa----tagttgttccttgatgtacgcatagt |
25871552 |
T |
|
| Q |
771 |
tgatac |
776 |
Q |
| |
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|||||| |
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| T |
25871551 |
tgatac |
25871546 |
T |
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