View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_21 (Length: 419)

Name: NF19951_low_21
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_21
NF19951_low_21
[»] chr6 (17 HSPs)
chr6 (9-415)||(2929651-2930059)
chr6 (9-407)||(2996703-2997101)
chr6 (10-407)||(2934949-2935349)
chr6 (23-407)||(2937810-2938194)
chr6 (48-390)||(2927527-2927869)
chr6 (24-395)||(2974369-2974740)
chr6 (65-390)||(3003174-3003495)
chr6 (18-415)||(2983208-2983605)
chr6 (9-403)||(2964863-2965280)
chr6 (23-407)||(2658311-2658713)
chr6 (65-309)||(2952384-2952624)
chr6 (9-113)||(2954726-2954829)
chr6 (123-388)||(2979257-2979521)
chr6 (314-390)||(2985695-2985771)
chr6 (173-232)||(2954666-2954725)
chr6 (17-68)||(2986421-2986472)
chr6 (24-56)||(2952657-2952689)
[»] scaffold0024 (2 HSPs)
scaffold0024 (10-407)||(34573-34970)
scaffold0024 (280-415)||(44532-44667)
[»] chr7 (1 HSPs)
chr7 (10-415)||(3339367-3339775)
[»] chr3 (3 HSPs)
chr3 (65-406)||(49613787-49614128)
chr3 (66-418)||(49618751-49619102)
chr3 (76-190)||(49617650-49617758)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 2930059 - 2929651
Alignment:
Q  9 gataatactaatagcaataattatgaactaaacaatgaaagaaatca--cttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagt 106  Q
    |||||||  |||| ||||||||||||||| |||||| ||||||||||  || |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  2930059 gataataagaataacaataattatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2929960  T
Q  107 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 206  Q
    ||||| ||||||||| | ||| |||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  2929959 gagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattc 2929860  T
Q  207 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 306  Q
    | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2929859 taacaaaaagcatttaagtctttgcatagaatagagaaatgaggactgatattagaatgtataatatatttgcaaaaaccattaaacatgttagccacag 2929760  T
Q  307 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataatc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2929759 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatatcggcgtccttaccagtatttataagaaaatccataatagtaacataatc 2929660  T
Q  407 aagaatata 415  Q
    |||||||||    
T  2929659 aagaatata 2929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 407
Target Start/End: Original strand, 2996703 - 2997101
Alignment:
Q  9 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||  |||||||    
T  2996703 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtga 2996802  T
Q  109 gaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattctt 208  Q
    |||||||||||| |||||| |||| |||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |    
T  2996803 gaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcct 2996902  T
Q  209 acaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaa 308  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||| || |||| |||||||||||||||||| |||||||||||||    
T  2996903 acaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaa 2997002  T
Q  309 tgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataatca 407  Q
    | | ||||||||| ||||||||||||||||||||| |||| |||||| ||  | ||||||||||| ||||||||| |||||| || || ||||||||||    
T  2997003 tcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaaaacagaaacataatca 2997101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 2935349 - 2934949
Alignment:
Q  10 ataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt---actacttgcaagactgaacaaactgattgaagtaaagt 106  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||   || ||||||||||| |||||||||||||||||||||||    
T  2935349 ataatactaatagaaataattatgaactcaacaatgaaagaaatcactaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2935250  T
Q  107 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 206  Q
    ||||| ||||||||| ||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2935249 gagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattc 2935150  T
Q  207 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 306  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||||||||| |||||||||||    
T  2935149 ttacaaaaagcatttaagtctttgcatagaatagagaaatgagaactgatattagattgtgtaacatttttccaaagaccattaaacaagttagccacag 2935050  T
Q  307 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataatc 406  Q
    ||| | | ||  ||| |  ||| | ||||||||| ||| ||| |||||| || || ||| ||||||||||||||||| ||||||| | || |||||||||    
T  2935049 aatcactatccgcaagcatattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatccatgacagcaacataatc 2934950  T
Q  407 a 407  Q
    |    
T  2934949 a 2934949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 407
Target Start/End: Complemental strand, 2938194 - 2937810
Alignment:
Q  23 caataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaa 122  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||     
T  2938194 caataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataagtagtaag 2938095  T
Q  123 attcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcattta 222  Q
    ||||| |||| |||||||||||| ||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||||  | || ||||||||||    
T  2938094 attccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggattactgcagaaagcattta 2937995  T
Q  223 agtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaa 322  Q
    | |||||||| ||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||  ||||||||||||| | |||||||||     
T  2937994 attctttgcaaagaatagagaattgagaactgatatcagaatatacaacatttttgcaaagaccattaaacaaattagccacagaatcactgtctccaag 2937895  T
Q  323 ccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataatca 407  Q
    |||||||||||||||||  |||  || ||||||  |||| |||||||| |||||||||||| |||||| || |  ||||||||||    
T  2937894 ccaattttccagtattttgttccaaacaagtatacccgcatccttaccggtatttataaggtaatccaaaacaacaacataatca 2937810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 48 - 390
Target Start/End: Complemental strand, 2927869 - 2927527
Alignment:
Q  48 agaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgt 147  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt 2927770  T
Q  148 gccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattg 247  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |  |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  2927769 gccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagagaattg 2927670  T
Q  248 agaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctga 347  Q
    |||||||||  ||||| || ||| |||||| | |||||||||||||| |||||||||||||| |  |||||||| |  |||||||||||||||  |||||    
T  2927669 agaactgattgtagaacgtgtaacatttttaccaagaccattaaacaagttagccacagaatcaccgtctccaagcatattttccagtatttccctctga 2927570  T
Q  348 ataagtatgtccgcgtccttaccagtatttataaggaaatcca 390  Q
    | |||||| ||| | ||||||||||||||||||||| ||||||    
T  2927569 acaagtatatccacatccttaccagtatttataaggtaatcca 2927527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 395
Target Start/End: Complemental strand, 2974740 - 2974369
Alignment:
Q  24 aataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaa 123  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||  ||||| || ||||||||||||||| ||||    
T  2974740 aataattatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaa 2974641  T
Q  124 ttcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaa 223  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||| ||    
T  2974640 ttccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaa 2974541  T
Q  224 gtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaac 323  Q
     |||||||| ||||||||||| ||||||||||||||||||| | |||||||||  | |||||||||||| | | |||| ||||||| | ||||||||| |    
T  2974540 ttctttgcaaagaatagagaaatgagaactgatattagaatttgtaatattttctccaagaccattaaataagatagcaacagaatcactgtctccaagc 2974441  T
Q  324 caattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataata 395  Q
    ||||||| |||||| |   || ||| |||||| ||| | ||| ||| ||||||||||||| |||||| ||||    
T  2974440 caattttgcagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatccaaaata 2974369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 65 - 390
Target Start/End: Original strand, 3003174 - 3003495
Alignment:
Q  65 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 164  Q
    |||||||||||||||||    |||||||| |||||||||||||||| |||| ||||| ||||| |||| |||||||||||| ||||| ||||| ||||||    
T  3003174 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa 3003269  T
Q  165 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 264  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||  |||||     
T  3003270 taatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtctttgccaagaatagagaattgagaactgattgtagaac 3003369  T
Q  265 gtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtc 364  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||| | ||||||||| |  |||||||||||||||  |||||| |||||| ||| | ||    
T  3003370 gtataatatctttgccaagaccattaaacaagttagccacagaatcactgtctccaagcatattttccagtatttcgctctgaacaagtatatccacatc 3003469  T
Q  365 cttaccagtatttataaggaaatcca 390  Q
    |||| |||||||||||||| ||||||    
T  3003470 cttagcagtatttataaggtaatcca 3003495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 2983605 - 2983208
Alignment:
Q  18 aatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagta 117  Q
    |||| ||||||||||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||    
T  2983605 aataacaataattatgaactcaacaatgaaagaaatgactaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagta 2983506  T
Q  118 gtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagc 217  Q
    |||| | ||| ||||||||||||||| | | |||||||||||||| |||||||||||||||||| ||||||||| ||| || |||||| |||||||||||    
T  2983505 gtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaagc 2983406  T
Q  218 atttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtct 317  Q
    ||  || || ||| | ||| |   ||| ||| ||||||  ||||| | || || ||||||||||||||||||||||| | |||||| ||| |||  ||||    
T  2983405 atccaattcattggaaagacttacgaaatgataactgagtttagattttacaacatttttgcaaagaccattaaacaagatagccatagattgaccgtct 2983306  T
Q  318 ccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataatcaagaatata 415  Q
    |||| | | ||||| |||||||  |||||||||||||  ||| | ||||||||| ||||||||||| |||||| || |  ||||||||||||||||||    
T  2983305 ccaagcaagttttctagtatttgcttctgaataagtacatccacatccttaccattatttataaggtaatccaaaacaagaacataatcaagaatata 2983208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 2965280 - 2964863
Alignment:
Q  9 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggc---------ttgtactacttgcaagactgaacaaactgattgaa 99  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||         |||||||||||||||||    |||||||| |||||    
T  2965280 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaagcattaggttgttgtactacttgcaaga----acaaactgtttgaa 2965185  T
Q  100 gtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacct------ 193  Q
     ||||||||||||||||||||| ||||| |||| |||||||||||  |||||||||||| |||| ||||||||| | ||||| | ||||||| |          
T  2965184 ttaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgcatcagagtggacttcaacttcaacgt 2965085  T
Q  194 ----at--------gccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaa 281  Q
        ||        |||||||||||  |||||||||||| || |||||||| |||||||||||||||  |||||||||||||||||||| || |||| ||    
T  2965084 caacattaactggcgccaaggattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaatgtataacatatttggaa 2964985  T
Q  282 agaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataa 381  Q
    ||||||||||||| |||||||||||||| | | ||||||| |  ||||||||||||||  ||||||| |||||| ||| | ||||| |||||||||||||    
T  2964984 agaccattaaacaagttagccacagaatcactatctccaagcatattttccagtattttgttctgaacaagtatatccacatccttgccagtatttataa 2964885  T
Q  382 ggaaatccataatagtaacata 403  Q
    || |||||| || || ||||||    
T  2964884 ggtaatccaaaacagcaacata 2964863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 407
Target Start/End: Original strand, 2658311 - 2658713
Alignment:
Q  23 caataattatgaactaaacaatgaaagaaatcacttggaggc------ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagt 116  Q
    ||||||||||||||  ||||||||||||||||||| |||| |      |||||||||||| ||||| |||||||||| ||||| || |||||||| ||||    
T  2658311 caataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagt 2658410  T
Q  117 agtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagc------------cttcaacctatgccaaggat 204  Q
    ||||| ||||| |||| ||||||| |||  | |||||||||| |||||||||||||||| |||||  |            ||| ||| || |||||||||    
T  2658411 agtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggat 2658510  T
Q  205 tcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccac 304  Q
    || |||||||| | ||||||||||  || ||||||| ||| |||| |||| ||||| ||||  ||| |||||||||||||||| |||||| |||||||||    
T  2658511 tcctacaaaaatcttttaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaaacaagttagccac 2658610  T
Q  305 agaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataa 404  Q
    ||||| | ||||||||| |||||||||||||||||  ||  ||| |||||| ||| | ||||||||||||||||||||| |||||| || || |||||||    
T  2658611 agaatcactgtctccaagccaattttccagtattttgtttggaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagcaacataa 2658710  T
Q  405 tca 407  Q
    |||    
T  2658711 tca 2658713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 65 - 309
Target Start/End: Complemental strand, 2952624 - 2952384
Alignment:
Q  65 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 164  Q
    |||||||||||||||||    |||||||| |||||||||||||||| |||| ||||  ||||| |||| |||||||||||| ||||||||||| |||| |    
T  2952624 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 2952529  T
Q  165 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 264  Q
    ||||||||||| ||||| || |||||| ||| |||||||||  ||||||| |||||||  |||||||  | |||||||||||||||||||||||||||||    
T  2952528 taatcacgcctcagagtggctttcaacttattccaaggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatattagaat 2952429  T
Q  265 gtataatatttttgcaaagaccattaaacatgttagccacagaat 309  Q
     || || ||||||||||| |||||||||| |||||||||||||||    
T  2952428 atacaacatttttgcaaataccattaaacctgttagccacagaat 2952384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 2954829 - 2954726
Alignment:
Q  9 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtga 108  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2954829 gataatactaatagcaataat-atgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtga 2954731  T
Q  109 gaaca 113  Q
     ||||    
T  2954730 taaca 2954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 388
Target Start/End: Complemental strand, 2979521 - 2979257
Alignment:
Q  123 attcccgcaacggaagcagcagtgtgccaagga--gtattgcaataatcacgcctgagagtagccttcaacct------atgccaaggattcttacaaaa 214  Q
    ||||| ||||||||||||||| | |||| ||||  |||||||||  |||| ||||||||| |||||||||  |      ||||||||||||  || ||||    
T  2979521 attccagcaacggaagcagcaatttgcctaggatcgtattgcaacgatcatgcctgagagaagccttcaagttcaactcatgccaaggattactataaaa 2979422  T
Q  215 agcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattg 314  Q
    | ||||||| |||||||| ||||||||||| |||||||||||||         ||| ||||| ||||||| |||||||||  |||||  |||||||| ||    
T  2979421 atcatttaaatctttgcaaagaatagagaaatgagaactgatat---------taacattttcgcaaagatcattaaacaatttagcagcagaatgactg 2979331  T
Q  315 tctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatc 388  Q
    ||||||| | |||||||||||||||   || ||| |||||| ||| | ||| |||| |||||||||||| ||||    
T  2979330 tctccaagcaaattttccagtattttgctccgaacaagtatatccacatccgtaccggtatttataaggtaatc 2979257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 2985771 - 2985695
Alignment:
Q  314 gtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 390  Q
    ||||| ||||||||||||||||||||  ||||||| |||||| ||||| ||||||| ||||||||||||| ||||||    
T  2985771 gtctcgaaaccaattttccagtatttggttctgaacaagtatatccgcatccttactagtatttataaggtaatcca 2985695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 2954725 - 2954666
Alignment:
Q  173 cctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgca 232  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||    
T  2954725 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgca 2954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 2986472 - 2986421
Alignment:
Q  17 taatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt 68  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  2986472 taataacaataattatgaactcaacaatgaaagaaatcactaggaggcttgt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 2952689 - 2952657
Alignment:
Q  24 aataattatgaactaaacaatgaaagaaatcac 56  Q
    |||||||||||||| ||||||||||||||||||    
T  2952689 aataattatgaactcaacaatgaaagaaatcac 2952657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 34573 - 34970
Alignment:
Q  10 ataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgag 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  34573 ataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgag 34672  T
Q  110 aacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattctta 209  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||  ||    
T  34673 aacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattacta 34772  T
Q  210 caaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaat 309  Q
    ||||| |||||||||| |||||| ||||||||||| |||||||||||||||  |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  34773 caaaatgcatttaagtttttgcaaagaatagagaaatgagaactgatattatgatgtataacatttttgcaaagacgattaaacaagttagccacagaat 34872  T
Q  310 gattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataatca 407  Q
     | ||||||||| | ||||   ||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||| || |  ||||||||||    
T  34873 cactgtctccaagcaaattagtcagtatttctttccgaacaagtatatccgcatccttaccagtatttataaggaaatccaaaacaacaacataatca 34970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 415
Target Start/End: Original strand, 44532 - 44667
Alignment:
Q  280 aaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttat 379  Q
    ||||| |||||||||  ||||||||| ||||| ||||||||| | |||||||||||||||   || ||| | |||| || || |||||||||||||||||    
T  44532 aaagatcattaaacaaattagccacataatgactgtctccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatttat 44631  T
Q  380 aaggaaatccataatagtaacataatcaagaatata 415  Q
    |||| |||||| ||||| |||||||| || ||||||    
T  44632 aaggtaatccaaaatagcaacataattaataatata 44667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 3339775 - 3339367
Alignment:
Q  10 ataatactaatagcaataattatga---actaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagt 106  Q
    |||||||||| ||||||||||||||   ||| ||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3339775 ataatactaagagcaataattatgatgaactcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagt 3339676  T
Q  107 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 206  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3339675 gagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattc 3339576  T
Q  207 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 306  Q
    ||||||||| |||||||||||||||  ||| ||| ||| |||||||| | | ||||||| |||| |||||||||||||||||||||||  ||||||||||    
T  3339575 ttacaaaaatcatttaagtctttgccaagagtagggaaatgagaacttacactagaatgcataacatttttgcaaagaccattaaacaatttagccacag 3339476  T
Q  307 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataatagtaacataatc 406  Q
    ||| | ||||| ||| ||||||||| ||||||||  ||| || |||||| ||| | ||| ||| |||||||||||||||||||| || || |||||||||    
T  3339475 aatcactgtctgcaagccaattttctagtatttcgctcttaacaagtatatccacatccatactagtatttataaggaaatccaaaaaagcaacataatc 3339376  T
Q  407 aagaatata 415  Q
    || ||||||    
T  3339375 aataatata 3339367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 65 - 406
Target Start/End: Complemental strand, 49614128 - 49613787
Alignment:
Q  65 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 164  Q
    |||||| |||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||| ||||||||| | ||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa 49614029  T
Q  165 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 264  Q
    |||||||| |||||||| |||||||| |||||||||||||  | ||||||| |||| |||||||  |||||||||||| | |||||||||| ||   |||    
T  49614028 taatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagagtactgagaactgaaatacaaat 49613929  T
Q  265 gtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtc 364  Q
    || ||| |||||| ||||||| |||||||| |||||||||||||| | | || |||| ||||||  |||||||||  ||||||| |||||| ||| | ||    
T  49613928 gtgtaacatttttccaaagactattaaacaagttagccacagaatcactatccccaagccaattcaccagtattttcttctgaacaagtatatccacatc 49613829  T
Q  365 cttaccagtatttataaggaaatccataatagtaacataatc 406  Q
    ||| |||||||| ||||||||||||| || || |||||||||    
T  49613828 cttgccagtattaataaggaaatccaaaacagcaacataatc 49613787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 66 - 418
Target Start/End: Complemental strand, 49619102 - 49618751
Alignment:
Q  66 tgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaat 165  Q
    ||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  166 aatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatg 265  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||||||| || | ||||||||    |||| | |||| |||||||||| |||   |||    
T  49619002 aatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaacca-tcaagtctttaggaagaagacagaaatgagaactgaaatttatatg 49618904  T
Q  266 tataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtcc 365  Q
    |  || |||||| |||||||||||| ||| ||| |||||||||| | ||||| ||| |  ||| ||| ||||| || |||||| |||||| ||||| |||    
T  49618903 tgaaacatttttccaaagaccattatacaagtttgccacagaatcactgtctgcaagcatattatcctgtattcctctctgaacaagtatatccgcatcc 49618804  T
Q  366 ttaccagtatttataaggaaatccataatagtaacataatcaagaatatagga 418  Q
     ||||  ||||||||||| |||||| || || || |||||||  |||||||||    
T  49618803 ctaccgatatttataaggtaatccaaaacagaaatataatcataaatatagga 49618751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 49617758 - 49617650
Alignment:
Q  76 gcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcct 175  Q
    ||||||| ||| ||||||||||||||||||  |||| ||||||||||||||| ||||| |||||||| || |||||   | || ||||| ||||| ||||    
T  49617758 gcaagacagaataaactgattgaagtaaag--agaataagtagtaaaattccagcaacagaagcagctgt-tgcca---actagtgcaaaaatcatgcct 49617665  T
Q  176 gagagtagccttcaa 190  Q
    |||||||||||||||    
T  49617664 gagagtagccttcaa 49617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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