View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_26 (Length: 384)
Name: NF19951_low_26
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 25426872 - 25427229
Alignment:
| Q |
10 |
catcatcatcaatgcatcgatcaatcaacttaacacaacccacatacttcaataagcatgccaatcaaattaatggtaaatgtaaatcaattttactctt |
109 |
Q |
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| T |
25426872 |
catcaacatcaatgcatcgatcaatcaacttaacacaacccacatacttcaataagcatgccaatcaaattaatggtaaatgtaaatcaattttactctt |
25426971 |
T |
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| Q |
110 |
acaattcaatgagtcctccattcttttaaaaccattacaccaattttaaaatgcaattacaaaagagggttgatgtatcaaaactcaggatagttattgg |
209 |
Q |
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| T |
25426972 |
aacattcaacgagtcctccattcttttaaaaccattacaccaattttaaaatgcaattacaaaagagggttgatgtatcaaaactcaggatagttattgg |
25427071 |
T |
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| Q |
210 |
atgtaagtgtaatcgtaattaacattgatttacacatacactaaacatctgtaaaatccttcaaaacattttcactagagtataactatcaacatcaatg |
309 |
Q |
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| T |
25427072 |
atgtaagtgtaatcgtaattaacattgatttatacatacactaaacatctgtaaaatccttcaaaacattttcactagagtataactatcaacatcaatg |
25427171 |
T |
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| Q |
310 |
ccgtcaatcagtaaacttaacacaccctacaagctttaataagcatggcaatcaaatt |
367 |
Q |
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| T |
25427172 |
ccgtcaatcagtaaacttaacacaccctacaagctttaataagcatgtcaatcaaatt |
25427229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 25426848 - 25426942
Alignment:
| Q |
272 |
aaaacattttcactagagtataactatcaacatcaatgccgtcaatcagtaaacttaacacaccctacaagctttaataagcatggcaatcaaatt |
367 |
Q |
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| T |
25426848 |
aaaacactttcactagagaataaccatcaacatcaatg-catcgatcaatcaacttaacacaacccacatacttcaataagcatgccaatcaaatt |
25426942 |
T |
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