View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19951_low_28 (Length: 366)
Name: NF19951_low_28
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 53702271 - 53702615
Alignment:
| Q |
16 |
ataaaggtgccaggaataaaatcagatcaaattagtaagaataagtaacaactgtagcgttttcatcgctattttgactgcaaacaggtgaaccccacat |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53702271 |
ataaaggtgccaagaataaaatcagatcaaattagtaagaataagtaacaactgtagcgttttcatcgctattttgactgcaaacaggtgaaccccacat |
53702370 |
T |
|
| Q |
116 |
atttcatgtatttagaaagtcacttaac-----------agctgatgcaatgtaatatgatgtagatatttgcacacacaaagagctgcgtatgaattga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
53702371 |
atttcatgtatttagaaagtcacttaactggagtgtaacagctgatgcaatgtaatatgatgtagatatgtgcacacacaaagagctgcgtatgaattaa |
53702470 |
T |
|
| Q |
205 |
ataggagcggatatatctatctccctggattcacaaactcgtttcactgaaagagaaagaatc-ggagaggaatgatattcaagcttagctaaaagcatg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53702471 |
ataggagcggatatatctatctccctggattcacaaactcgtttcactgaaagagaaagaatctggagaggaatgatattcaagcttagctaaaagcatg |
53702570 |
T |
|
| Q |
304 |
tccatggtaaatgaaaacattcaacaatatggtagaatgacaaga |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53702571 |
tccatggtaaatgaaaacattcaacaatatggtagaatgacaaga |
53702615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University