View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_29 (Length: 360)
Name: NF19951_low_29
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 39384629 - 39384300
Alignment:
| Q |
20 |
ggttggcctaaacaaattgaaacaaatcatagccatacacttgaagcttactacttcattagagatttactaaagacgcatttgaaaagaaatgataaag |
119 |
Q |
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| T |
39384629 |
ggttggccaaaacaaattgaaacaaatcatagccatacacttgaagcttactacttcattagagatttactaaagacgcatttgaaaagaaatgataaag |
39384530 |
T |
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| Q |
120 |
caaagtttctattgactggtcacagtctaggtggagcacttgcaattctctttcctgcaatattgatgttgcatgaggagtcctttcttttggagaggct |
219 |
Q |
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| T |
39384529 |
caaagtttctattgactggtcacagtctaggtggagcacttgcaattctctttcctgcaatattgatgttgcatgaggagtcctttcttttggagaggct |
39384430 |
T |
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| Q |
220 |
tcaaggggtttacacatttggtcaaccaagagttggagatgac--atatttgctaaatacatggagaagaatttgaaagataattgtattaagttttaca |
317 |
Q |
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| T |
39384429 |
tcaaggggttcacacatttggtcaaccaagagttggagatgacatatatttactgaatacatggagaagaatttgaaagataatggtattaagttttaca |
39384330 |
T |
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| Q |
318 |
gaattgtttatagctatgatattattccta |
347 |
Q |
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| T |
39384329 |
gaattgtttatagctatgatattattccta |
39384300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 6289570 - 6289609
Alignment:
| Q |
222 |
aaggggtttacacatttggtcaaccaagagttggagatga |
261 |
Q |
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| T |
6289570 |
aagggatttacacatttggacaaccaagagttggagatga |
6289609 |
T |
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