View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_3 (Length: 791)
Name: NF19951_low_3
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 97 - 618
Target Start/End: Original strand, 28232120 - 28232640
Alignment:
| Q |
97 |
acataagatatcattatcgttcaatcaaaatacaaattttagttcaacacattgtgataactctctaannnnnnnaataggttggtacaactaaacaatt |
196 |
Q |
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| T |
28232120 |
acataagacatcgatatcgtttaatcaaaatt-aaattttagttcaacatattgtgataactctctaaattttttaataggttggtacaactaaacaatt |
28232218 |
T |
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| Q |
197 |
tcaaatcatttagtatcaagtatttaattnnnnnnntaa-taatttctttgatatttatttgagcacgtaatggttgtcaacaacactttctcaagtact |
295 |
Q |
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| T |
28232219 |
taaaatcatttagtaccaagtatttaattaaaaaaaaaaataatttctttgatatttatttgagcacgtaatggttgtcaacaacactttctcaagtact |
28232318 |
T |
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| Q |
296 |
aatttcaacaatcaccgaaacaaaattgaaaaaagaacaccaaacatggaccctacaatatttccgtactatgggcaggacttcacatgacataagatag |
395 |
Q |
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| T |
28232319 |
aatttcaacaatcaccgaaacaaaattgaaaaacaaacaccaaacatggaccctacaatatttccgtactatgggcaggacttcacatgacataagatac |
28232418 |
T |
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| Q |
396 |
taaacaacttaacaacttaatatcctatctttacacgtaactacccaatcccatttccatttatctccaaattttccatttccatactctatataaatac |
495 |
Q |
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| T |
28232419 |
taaacaacttaacaacttaatatcccatctttacacgtaactacccaatcccatttccatttatctctaaattttccatttccatactctatataaatac |
28232518 |
T |
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| Q |
496 |
ctcaccatcaccaccaacacaaacacacacattatactcaccaaattcacattccaaaagtgatt-cttcccttcttttccttcttagtgttcctcaaac |
594 |
Q |
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| T |
28232519 |
ctcaccatcaccaccaacacaaacacacac--tataccctccaaattcacattccaaaagtgattccttcccttcttttccttctttgtgttcctcaaac |
28232616 |
T |
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| Q |
595 |
acatgagtgtaagaggagctagag |
618 |
Q |
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| T |
28232617 |
acatgagtgtaagaggagctagag |
28232640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 651 - 776
Target Start/End: Original strand, 28232679 - 28232804
Alignment:
| Q |
651 |
tggagagccaagatcatcttacaccatcacacgtggatgcatctcgaccatcccttggtttccctttgggcactgcccttctcttgatcatcatttttag |
750 |
Q |
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| T |
28232679 |
tggagagccaagatcatcttacaccatcacacgtggatgcatctcgaccatcccttggtttccctttgggcactgcccttctcttgatcatcatttttag |
28232778 |
T |
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| Q |
751 |
cttgagtggtatcctctcttgttgct |
776 |
Q |
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| T |
28232779 |
cttgagtggtatcctctcttgttgct |
28232804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 28232037 - 28232094
Alignment:
| Q |
14 |
atcaatgagaatttctttaacctttcctttcatttgattgatatttcccacaactaac |
71 |
Q |
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| T |
28232037 |
atcaatgagaatttctttaaccttttcttttattttattgatattttccacgactaac |
28232094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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