View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_30 (Length: 343)
Name: NF19951_low_30
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 55372871 - 55373187
Alignment:
| Q |
14 |
agggtcataataatttttaaaccaactcatcttttctatcgtgtatacgattatcatcatccacaactggaaaacccaattaccgtaataagctaactga |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55372871 |
agggtcataataatttttaaaccaactcaccttttctgtcgtgtatacgattatcatcatccacaactggaaaacccaattaccgtaataagcttactga |
55372970 |
T |
|
| Q |
114 |
atcttctcgttgatctgggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaattg |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55372971 |
atcttctcgttgatctgggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaattg |
55373070 |
T |
|
| Q |
214 |
acgatagtcttgcgtgaaaattttgttacaaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttgaaattttttcttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55373071 |
acgatagtcttgcgtgaaaattttgttacaaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttgattttttttcttt |
55373170 |
T |
|
| Q |
314 |
tacccaattttgatttt |
330 |
Q |
| |
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||||||||||||||||| |
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| T |
55373171 |
tacccaattttgatttt |
55373187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 55371987 - 55372303
Alignment:
| Q |
14 |
agggtcataataatttttaaaccaactcatcttttctatcgtgtatacgattatcatcatccacaactggaaaacccaattaccgtaataagctaactga |
113 |
Q |
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||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55371987 |
agggtcataataatttttaaaccaactcaccttttttgtcgtgtatacgattatcatcatccacaactggaaaacccaattaccgtaataagcttactga |
55372086 |
T |
|
| Q |
114 |
atcttctcgttgatctgggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaattg |
213 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55372087 |
atcttttcgttgatctaggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaatta |
55372186 |
T |
|
| Q |
214 |
acgatagtcttgcgtgaaaattttgttacaaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttgaaattttttcttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
55372187 |
acgatagtcttgcgtgaaaattttgttacaaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttgattttttttcttt |
55372286 |
T |
|
| Q |
314 |
tacccaattttgatttt |
330 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
55372287 |
tacccaattttgatttt |
55372303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 30931963 - 30932276
Alignment:
| Q |
16 |
ggtcataataatttttaaaccaactcatcttttctatcgtgtatacgattatcatcatccacaactggaaaacccaattaccgtaataagctaactgaat |
115 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30931963 |
ggtcataatagtttttaaaccaactcaccttttctgtcgtgtatacgattattatcatccacaactggaaaacccaattaccgtaataagcttactgaat |
30932062 |
T |
|
| Q |
116 |
cttctcgttgatctgggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaattgac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30932063 |
cttctcgttgatctgggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaattgac |
30932162 |
T |
|
| Q |
216 |
gatagtcttgcgtgaaaattttgttacaaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttgaaattttttctttta |
315 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
30932163 |
gatagtcttgcgtgaaaattttattaaaaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttg-atttttttctttta |
30932261 |
T |
|
| Q |
316 |
cccaattttgatttt |
330 |
Q |
| |
|
||||||||||||||| |
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|
| T |
30932262 |
cccaattttgatttt |
30932276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 7669377 - 7669063
Alignment:
| Q |
16 |
ggtcataataatttttaaaccaactcatcttttctatcgtgtatacgattatcatcatccacaactggaaaac-ccaattaccgtaataagctaactgaa |
114 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||| |
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|
| T |
7669377 |
ggtcataatagtttttaaaccaattcaccttttctgtcgtgtatacgattatcatcatccacaactgaaaaaatccaattaccttaataagcttactgaa |
7669278 |
T |
|
| Q |
115 |
tcttctcgttgatctgggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaattga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7669277 |
tcttctcgttgatctgggttaaaactgataattttgtatatgcttttgctctctcttgttcattgtcgaggttggtgctcttcctccatgaataaattga |
7669178 |
T |
|
| Q |
215 |
cgatagtcttgcgtgaaaattttgttacaaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttgaaattttttctttt |
314 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
7669177 |
cgatagtcttgcgtgaaaattttattatgaaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttg-atttttttctttt |
7669079 |
T |
|
| Q |
315 |
acccaattttgatttt |
330 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
7669078 |
acccaattttgatttt |
7669063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 27363169 - 27363248
Alignment:
| Q |
244 |
aaatcaagcttcaattcaattatccctgtttgtttcctcactataagttggtatttgaaattttttcttttacccaattttgatttt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
27363169 |
aaatcaagcttcaattcaattatccctgtttg------cactataagttggtatttgat-ttttttcttttacccaattttgatttt |
27363248 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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