View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_34 (Length: 319)
Name: NF19951_low_34
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 3294519 - 3294810
Alignment:
| Q |
14 |
aataccacctgcgaatctccaaatagagaattgtcgttgtaaggatcccttaactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattc |
113 |
Q |
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| T |
3294519 |
aataccacctgcgaatctccaaatagagaattgtcgttgtaaggatcccttgactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattc |
3294618 |
T |
|
| Q |
114 |
attcatttttgcatccatgtgggtgtgaatgagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctac |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294619 |
tttcatttttgcatccatgtcggtgtgaatgagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctat |
3294718 |
T |
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| Q |
214 |
tttatttttattatcatttaaatagtaaactttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataat |
305 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294719 |
tttatttttattatcattgaaatagtaaactttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataat |
3294810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 49496851 - 49496891
Alignment:
| Q |
264 |
ttctagtttcgaggacgaaacaattcttaagggggtaataat |
305 |
Q |
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| T |
49496851 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataat |
49496891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 28502999 - 28502843
Alignment:
| Q |
149 |
taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttat |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
28502999 |
taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtgtactttatttttattatcatttaaatagtaaacattac |
28502900 |
T |
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| Q |
249 |
ctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataat |
305 |
Q |
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| || |||| |||||||||||||||||||| ||||| ||| |||||||||||||||| |
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| T |
28502899 |
ccttttttttagatcttctagtttcgaggatgaaactatttttaagggggtaataat |
28502843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 19710448 - 19710408
Alignment:
| Q |
264 |
ttctagtttcgaggacgaaacaattcttaagggggtaataat |
305 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
19710448 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataat |
19710408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 51444547 - 51444403
Alignment:
| Q |
162 |
ttttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttatctttatttt-gag |
260 |
Q |
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||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||| ||||| | ||||||||| ||| |
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| T |
51444547 |
ttttctttaaaaatatgtatacatattttattctatctatatttaagtctactttattttcattcttgtttaaatagtgaacttgacctttattttagag |
51444448 |
T |
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| Q |
261 |
atcttctagtttcgaggacgaaacaattcttaagggggtaataat |
305 |
Q |
| |
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||||| |||||||| |||||||| ||| |||||||||||||||| |
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| T |
51444447 |
atcttttagtttcggggacgaaattatttttaagggggtaataat |
51444403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 24274818 - 24274858
Alignment:
| Q |
264 |
ttctagtttcgaggacgaaacaattcttaagggggtaataat |
305 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
24274818 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataat |
24274858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 10531181 - 10531108
Alignment:
| Q |
144 |
gagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctacttta |
217 |
Q |
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|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||| |
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| T |
10531181 |
gagtgtaagatcctagaattttctttaaacatatacatacatattttattctatctatgcttaagtttacttta |
10531108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 10531113 - 10531050
Alignment:
| Q |
242 |
actttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataat |
305 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10531113 |
actttacctttattttgagagcttctagtttcgaggacgaaacaatttttaagggggtaataat |
10531050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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