View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_35 (Length: 317)

Name: NF19951_low_35
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_35
NF19951_low_35
[»] chr2 (25 HSPs)
chr2 (16-301)||(30731952-30732237)
chr2 (28-301)||(30733933-30734205)
chr2 (45-251)||(32918074-32918280)
chr2 (136-246)||(2841015-2841125)
chr2 (136-252)||(43850042-43850158)
chr2 (27-256)||(9020836-9021065)
chr2 (136-256)||(9026775-9026896)
chr2 (138-277)||(8973280-8973420)
chr2 (172-256)||(9032042-9032126)
chr2 (136-248)||(9008018-9008131)
chr2 (164-277)||(9023415-9023528)
chr2 (178-256)||(8979311-8979389)
chr2 (136-256)||(9030387-9030507)
chr2 (138-238)||(10763878-10763978)
chr2 (136-243)||(19232398-19232504)
chr2 (178-252)||(8984686-8984760)
chr2 (136-277)||(8988423-8988565)
chr2 (136-254)||(8992139-8992258)
chr2 (136-277)||(9016461-9016606)
chr2 (138-243)||(6471709-6471813)
chr2 (136-241)||(35701893-35701998)
chr2 (136-217)||(17225661-17225743)
chr2 (136-214)||(17275862-17275940)
chr2 (207-242)||(39814115-39814150)
chr2 (28-84)||(8992294-8992349)
[»] chr1 (23 HSPs)
chr1 (16-301)||(14669587-14669872)
chr1 (16-301)||(14706032-14706317)
chr1 (37-301)||(14708522-14708786)
chr1 (19-301)||(14654222-14654503)
chr1 (19-301)||(14664013-14664294)
chr1 (16-301)||(14683694-14683979)
chr1 (36-294)||(14716242-14716500)
chr1 (50-301)||(14681544-14681794)
chr1 (19-301)||(14652469-14652752)
chr1 (19-301)||(14662260-14662543)
chr1 (50-301)||(14674426-14674676)
chr1 (45-301)||(14679804-14680059)
chr1 (150-301)||(14676576-14676727)
chr1 (139-301)||(14667112-14667273)
chr1 (136-252)||(38175528-38175644)
chr1 (138-277)||(33988038-33988177)
chr1 (36-277)||(28366097-28366338)
chr1 (138-242)||(11872481-11872585)
chr1 (167-239)||(37422175-37422247)
chr1 (173-249)||(28698549-28698625)
chr1 (28-104)||(14667007-14667083)
chr1 (145-192)||(14703133-14703180)
chr1 (136-197)||(7448425-7448486)
[»] chr8 (13 HSPs)
chr8 (36-301)||(10944297-10944561)
chr8 (49-278)||(41841064-41841292)
chr8 (136-278)||(44878950-44879092)
chr8 (136-278)||(44880829-44880971)
chr8 (45-245)||(40054312-40054512)
chr8 (46-243)||(37679757-37679953)
chr8 (146-245)||(37682057-37682156)
chr8 (145-253)||(42555090-42555198)
chr8 (136-228)||(44582870-44582962)
chr8 (172-278)||(42220880-42220985)
chr8 (172-256)||(42092010-42092093)
chr8 (202-252)||(42872514-42872564)
chr8 (139-192)||(44583110-44583162)
[»] chr6 (8 HSPs)
chr6 (90-279)||(10795842-10796031)
chr6 (90-279)||(10791604-10791793)
chr6 (136-245)||(30521242-30521351)
chr6 (145-243)||(8875691-8875789)
chr6 (47-192)||(13136607-13136752)
chr6 (136-202)||(11333273-11333339)
chr6 (139-238)||(21216032-21216131)
chr6 (44-117)||(10509479-10509552)
[»] chr4 (18 HSPs)
chr4 (45-258)||(11652300-11652512)
chr4 (136-279)||(49106527-49106670)
chr4 (136-279)||(50077197-50077340)
chr4 (136-279)||(49108631-49108774)
chr4 (138-244)||(26998740-26998846)
chr4 (139-244)||(26984668-26984773)
chr4 (138-254)||(3461142-3461258)
chr4 (136-244)||(48205832-48205940)
chr4 (136-217)||(21503706-21503787)
chr4 (140-243)||(41013548-41013651)
chr4 (138-238)||(26982549-26982646)
chr4 (136-209)||(35806165-35806238)
chr4 (145-279)||(49533638-49533765)
chr4 (185-238)||(6431957-6432010)
chr4 (139-218)||(51578274-51578352)
chr4 (138-181)||(54677590-54677633)
chr4 (138-188)||(34481105-34481155)
chr4 (204-240)||(34481155-34481191)
[»] chr5 (9 HSPs)
chr5 (28-252)||(7524961-7525185)
chr5 (138-256)||(1716451-1716570)
chr5 (138-245)||(3643640-3643747)
chr5 (138-241)||(4103249-4103352)
chr5 (146-212)||(5350672-5350738)
chr5 (136-243)||(16037861-16037966)
chr5 (174-238)||(19261152-19261216)
chr5 (45-116)||(3643769-3643839)
chr5 (145-192)||(13636365-13636412)
[»] chr7 (2 HSPs)
chr7 (136-245)||(27134511-27134620)
chr7 (146-239)||(8128149-8128241)
[»] scaffold0549 (1 HSPs)
scaffold0549 (136-194)||(5447-5505)
[»] chr3 (1 HSPs)
chr3 (197-243)||(15758562-15758608)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 30732237 - 30731952
Alignment:
Q  16 atgaaccagaataaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagct 115  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732237 atgaaccagaataaaaatttaaacttgaattggtggggtgcaccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagct 30732138  T
Q  116 accaaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 215  Q
    |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30732137 accaaagtggcctccccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttg 30732038  T
Q  216 atcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732037 atcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 30731952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 30734205 - 30733933
Alignment:
Q  28 aaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcc 127  Q
    |||||||| ||||||  ||||||||||||||||  ||||||| |||||||||| || || | |||| ||||||||||||||||||||||| ||| ||||     
T  30734205 aaaaatttgaacttggattggtggggtgcgccaagccaatgcaatagtgcaacgcactggcgacactcgagaagcctagtagcaagctactaaaatggct 30734106  T
Q  128 tnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 227  Q
    |       | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734105 tctccccctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 30734006  T
Q  228 aggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    |||||||||||||||| ||||  || ||| | ||  ||||||||||||||| |||||||||||| ||| |||||    
T  30734005 aggccgagaaaggtataagttacaacatgagatc-ctgctgcttttatatctgacatgttctcacttgttttct 30733933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 32918280 - 32918074
Alignment:
Q  45 ttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaag 144  Q
    |||||| ||||||||| || |||||||||||||||| ||||  | ||||| |||||||  |||||||||||||   | |||| |       |||||||||    
T  32918280 ttggtgaggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggcttctccccctcaaaaaag 32918181  T
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 244  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918180 taatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 32918081  T
Q  245 agttgaa 251  Q
    |||||||    
T  32918080 agttgaa 32918074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 2841015 - 2841125
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841015 tcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 2841114  T
Q  236 aaaggtatgag 246  Q
    |||||||||||    
T  2841115 aaaggtatgag 2841125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 43850158 - 43850042
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    |||||||||| |||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850158 tcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 43850059  T
Q  236 aaaggtatgagttgaaa 252  Q
    |||||||||||||||||    
T  43850058 aaaggtatgagttgaaa 43850042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 256
Target Start/End: Complemental strand, 9021065 - 9020836
Alignment:
Q  27 taaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggc 126  Q
    ||||||||| ||||||| |||||||||||| ||| ||| |||| |||||||||||||| |   ||||  |||||||| | ||||||| ||   || ||||    
T  9021065 taaaaatttgaacttgaattggtggggtgcacca-acctatgcaatagtgcaacacataggtgacacttgagaagcccaatagcaagttattgaaatggc 9020967  T
Q  127 ctnnnnnnntcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagcca 225  Q
    ||       |||||||||||||||||||  || |||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  9020966 ctctcaccctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatcttagcca 9020867  T
Q  226 aaaggccgagaaaggtatgagttgaaagatg 256  Q
    ||||||||||||| |||||| ||||||||||    
T  9020866 aaaggccgagaaatgtatgaattgaaagatg 9020836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 9026896 - 9026775
Alignment:
Q  136 tcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 234  Q
    |||||||||||||||||||  || |||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026896 tcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 9026797  T
Q  235 gaaaggtatgagttgaaagatg 256  Q
    ||||||||||||||||||||||    
T  9026796 gaaaggtatgagttgaaagatg 9026775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 8973420 - 8973280
Alignment:
Q  138 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 236  Q
    |||||||||||||||||| || |||| ||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8973420 aaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgaga 8973321  T
Q  237 aaggtatgagttgaaagatgggctcgttgctgcttttatat 277  Q
    ||||||||||||||||||||  |||| |  |||||||||||    
T  8973320 aaggtatgagttgaaagatgaactcgcttatgcttttatat 8973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 9032126 - 9032042
Alignment:
Q  172 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagatg 9032042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 9008131 - 9008018
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtg-tgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 234  Q
    |||||||||||||||||||  ||  ||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008131 tcaaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 9008032  T
Q  235 gaaaggtatgagtt 248  Q
    ||||||||||||||    
T  9008031 gaaaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 9023528 - 9023415
Alignment:
Q  164 ccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgt 263  Q
    ||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||     
T  9023528 ccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcgc 9023429  T
Q  264 tgctgcttttatat 277  Q
    |  |||||||||||    
T  9023428 ttatgcttttatat 9023415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 8979389 - 8979311
Alignment:
Q  178 atcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 256  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 8979311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 9030507 - 9030387
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    |||||||||||||||||||  |||||| ||||||  |||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  9030507 tcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaaaaggccaag 9030408  T
Q  236 aaaggtatgagttgaaagatg 256  Q
    |||  ||||||||||||||||    
T  9030407 aaaaatatgagttgaaagatg 9030387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 10763878 - 10763978
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    |||||||||||||||||| || || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaa 10763977  T
Q  238 a 238  Q
    |    
T  10763978 a 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 19232398 - 19232504
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||| |||||||||||| |||||| ||| |||  |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19232398 tcaaaaaggtaatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagatattacacttgatcttagccaaaaggccgag 19232496  T
Q  236 aaaggtat 243  Q
    ||||||||    
T  19232497 aaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 8984760 - 8984686
Alignment:
Q  178 atcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 252  Q
    |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8984760 atcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 8984686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 8988565 - 8988423
Alignment:
Q  136 tcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 234  Q
    |||||||||||||||||||| || | |||||||||   |||  |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |    
T  8988565 tcaaaaaagtaatttaatattgttgagaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatcttcgccaaaaggccaa 8988466  T
Q  235 gaaaggtatgagttgaaagatgggctcgttgctgcttttatat 277  Q
    ||| ||||| ||||||||||||  |||| |  |||||||||||    
T  8988465 gaatggtataagttgaaagatgaactcgcttatgcttttatat 8988423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 8992258 - 8992139
Alignment:
Q  136 tcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 234  Q
    ||||||||||||||||||||  | |||| ||||||| ||||  |||||||||| |||| ||||||||| |||||||||||||||||||||||||| | ||    
T  8992258 tcaaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaaagactga 8992159  T
Q  235 gaaaggtatgagttgaaaga 254  Q
    |||||| ||||||| |||||    
T  8992158 gaaaggcatgagttaaaaga 8992139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 9016606 - 9016461
Alignment:
Q  136 tcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaact---gataagaacagatactacacttgatcttagccaaaaggc 231  Q
    |||||||||||||||||||  || |||| ||||||| ||||  |||||||||||||||   ||||||||||||||||||| ||||||||||||||||||     
T  9016606 tcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataagaacagatactacatttgatcttagccaaaaggt 9016507  T
Q  232 cgagaaaggtatgagttgaaagatgggctcgttgctgcttttatat 277  Q
    |||  |||||||||||| |||||||  |||| |  |||||||||||    
T  9016506 cgaataaggtatgagttaaaagatgaactcgcttatgcttttatat 9016461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 6471709 - 6471813
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    |||||||||| |||||||| ||||| ||||| | ||  ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||| ||    
T  6471709 aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaa 6471807  T
Q  238 aggtat 243  Q
    ||||||    
T  6471808 aggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 35701998 - 35701893
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||  |||||||||||||    |||| |||||||||| |||||||||| |||| |||| |||| |||||||||||||||||||| |  |||    
T  35701998 tcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaaagttgag 35701899  T
Q  236 aaaggt 241  Q
    ||||||    
T  35701898 aaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 17225661 - 17225743
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgat-aagaacagatactacacttgat 217  Q
    ||||||||||||||||||||||| |||  |||||| ||| ||||||| |||||||| ||| || |||||||||||||||||||    
T  17225661 tcaaaaaagtaatttaatatcgtatgattcattggaccagatatcagttattaaaccgataaaaaacagatactacacttgat 17225743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 17275940 - 17275862
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacactt 214  Q
    ||||||| |||||| |||||||||||| ||||||| |||||||| | | ||| |||||||||||||  |||||||||||    
T  17275940 tcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  207 ctacacttgatcttagccaaaaggccgagaaaggta 242  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 8992349 - 8992294
Alignment:
Q  28 aaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacat 84  Q
    |||||||| ||||||| |||| |||||||||||| || |||| ||||||||||||||    
T  8992349 aaaaatttgaacttgaattggaggggtgcgccag-cccatgcaatagtgcaacacat 8992294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 14669587 - 14669872
Alignment:
Q  16 atgaaccagaataaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagct 115  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||| ||| |  ||||||||||||    
T  14669587 atgaaccagaataaaaatttaaacttgaattggtggggtgcaccagaccaatgctatagtgcaacacattggcgacacacaagaggattagtagcaagct 14669686  T
Q  116 accaaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 215  Q
    || ||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669687 actaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 14669786  T
Q  216 atcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669787 atcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 14669872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 14706317 - 14706032
Alignment:
Q  16 atgaaccagaataaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagct 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||| ||| |  ||||||||||||    
T  14706317 atgaaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgttatagtgcaacacatagtcaacacacaagaggattagtagcaagct 14706218  T
Q  116 accaaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 215  Q
    || ||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706217 actaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 14706118  T
Q  216 atcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||||||    
T  14706117 atcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatcagaaacgttctcagtttctttct 14706032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 14708786 - 14708522
Alignment:
Q  37 aacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnnt 136  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||| |||||| |||       |    
T  14708786 aacttgaattggtggggtgcgccaggccaatgctgtagtgcaacacattgacgacacaagagaagcctaatagcaagctactaaagtgacctctccccct 14708687  T
Q  137 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708686 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14708587  T
Q  237 aaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    |||||||||||||||||||||||||  |  |||||||||||| ||||| |||||| |||||||||    
T  14708586 aaggtatgagttgaaagatgggctcactagtgcttttatatctgacattttctcaattgctttct 14708522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 14654222 - 14654503
Alignment:
Q  19 aaccagaataaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctacc 118  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||  ||||||||||||||||||| |||| | |||||||||| | || ||||||||||||     
T  14654222 aaccagaataaaaatttaa-cttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctact 14654320  T
Q  119 aaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 218  Q
     |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654321 gaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14654420  T
Q  219 ttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||| |||||| ||||||||||||||||    
T  14654421 ttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctcagttgctttct 14654503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 14664013 - 14664294
Alignment:
Q  19 aaccagaataaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctacc 118  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||  ||||||||||||||||||| |||| | |||||||||| | || ||||||||||||     
T  14664013 aaccagaataaaaatttaa-cttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctact 14664111  T
Q  119 aaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 218  Q
     |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664112 gaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14664211  T
Q  219 ttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||| |||||| ||||||||||||||||    
T  14664212 ttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctcagttgctttct 14664294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 14683979 - 14683694
Alignment:
Q  16 atgaaccagaataaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagct 115  Q
    ||||||||||||||||||||||  |||  |||||||||||| |||  ||||||||||||||||||||||||   |||||||||| | |||||||||||||    
T  14683979 atgaaccagaataaaaatttaactttggattggtggggtgcaccaagccaatgctatagtgcaacacattggtgacacacgagaggactagtagcaagct 14683880  T
Q  116 accaaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 215  Q
    || ||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683879 actaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 14683780  T
Q  216 atcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||||||||||||||||||||||||||||||||||| |||| || | ||| ||||||||| ||||||| ||||||||||||||||    
T  14683779 atcttagccaaaaggccgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttctcagttgctttct 14683694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 294
Target Start/End: Complemental strand, 14716500 - 14716242
Alignment:
Q  36 aaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnn 135  Q
    |||||||| |||||||||||| |||  |||||||||||||||||||||||| | |||||||||| |  |||||||||||||| ||||| ||||           
T  14716500 aaacttgaattggtggggtgcaccaagccaatgctatagtgcaacacattggcgacacacgagaggattagtagcaagctactaaagttgcctctccccc 14716401  T
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716400 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 14716301  T
Q  236 aaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagtt 294  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  14716300 aaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttctcagtt 14716242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 14681794 - 14681544
Alignment:
Q  50 ggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaagtaatt 149  Q
    |||||| |||| |||||||||||||||||| ||||||   |||| ||||||||||||||||||||||| ||| |||| |       ||||||||||||||    
T  14681794 ggggtgtgccaaaccaatgctatagtgcaatacattgttgacacccgagaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatt 14681695  T
Q  150 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14681694 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttg 14681595  T
Q  250 aaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||| ||||||| | ||||||||||||||||||||| ||||| ||||||||||    
T  14681594 aaaaatgggctaggtgctgcttttatatcagacat-ttctccgttgctttct 14681544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 14652752 - 14652469
Alignment:
Q  19 aaccagaataaaa-atttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctac 117  Q
    ||||| ||||||| |||| ||||||| ||||||||||||||||  |||||||||||||||||| |||||  ||||| |||||||||||||||||||||||    
T  14652752 aaccaaaataaaatatttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctac 14652653  T
Q  118 caaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgat 217  Q
     ||| |||| |       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652652 taaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgat 14652553  T
Q  218 cttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    |||||||||||||||||||||||||||| || || || || |  | ||||||| ||||||||||||| |||||||||| |||||    
T  14652552 cttagccaaaaggccgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctcagttgttttct 14652469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 14662543 - 14662260
Alignment:
Q  19 aaccagaataaaa-atttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctac 117  Q
    ||||| ||||||| |||| ||||||| ||||||||||||||||  |||||||||||||||||| |||||  ||||| |||||||||||||||||||||||    
T  14662543 aaccaaaataaaatatttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctac 14662444  T
Q  118 caaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgat 217  Q
     ||| |||| |       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662443 taaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgat 14662344  T
Q  218 cttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    |||||||||||||||||||||||||||| || || || || |  | ||||||| ||||||||||||| |||||||||| |||||    
T  14662343 cttagccaaaaggccgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctcagttgttttct 14662260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 14674676 - 14674426
Alignment:
Q  50 ggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaagtaatt 149  Q
    |||||| |||| |||||||||||||||||| ||||||   |||| ||||||||||||||||||||||| ||| |||| |       ||||||||||||||    
T  14674676 ggggtgtgccaaaccaatgctatagtgcaatacattgttgacacccgagaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatt 14674577  T
Q  150 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 249  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674576 taatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 14674477  T
Q  250 aaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
     ||||| |||| | ||||||||||||||||||||| ||||| ||||||||||    
T  14674476 gaagattggctaggtgctgcttttatatcagacat-ttctccgttgctttct 14674426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 45 - 301
Target Start/End: Complemental strand, 14680059 - 14679804
Alignment:
Q  45 ttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaag 144  Q
    ||||| ||||||||||  |||||||| ||||||||| ||||| |||||| | ||||||||||||||||||||| ||  |||| |       |||||||||    
T  14680059 ttggtcgggtgcgccaagccaatgctgtagtgcaacgcattggcaacactcaagaagcctagtagcaagctactaatatggcttctccccctcaaaaaag 14679960  T
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 244  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679959 taatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14679860  T
Q  245 agttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||| ||||| |||| | ||||||||||||||||||||| ||||| ||||||||||    
T  14679859 agttggaagattggctaggtgctgcttttatatcagacat-ttctccgttgctttct 14679804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 14676727 - 14676576
Alignment:
Q  150 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 14676628  T
Q  250 aaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||| |||| || | ||| ||||||||| ||||||| ||||||||||||||||    
T  14676627 aaatatggactagctgccgcttttataacagacatcttctcagttgctttct 14676576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 14667112 - 14667273
Alignment:
Q  139 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 238  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14667112 aaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaa 14667211  T
Q  239 ggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    ||||||||||  || ||| | ||  ||||||||||||||| |||||||||||||||| |||||    
T  14667212 ggtatgagttacaacatgagatc-ctgctgcttttatatctgacatgttctcagttgttttct 14667273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 38175528 - 38175644
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175528 tcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 38175627  T
Q  236 aaaggtatgagttgaaa 252  Q
    |||||||||||||||||    
T  38175628 aaaggtatgagttgaaa 38175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 33988177 - 33988038
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988177 aaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 33988078  T
Q  238 aggtatgagttgaaagatgggctcgttgctgcttttatat 277  Q
    |||||||||||||||||||| |||  |  |||||||||||    
T  33988077 aggtatgagttgaaagatggactcacttatgcttttatat 33988038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 277
Target Start/End: Original strand, 28366097 - 28366338
Alignment:
Q  36 aaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnn 135  Q
    |||||| | |||||||| |||||||| ||||||| |||||||||| |||  || ||||| || |  |||||||||||||||| | | | | ||           
T  28366097 aaactttaattggtgggatgcgccag-ccaatgcaatagtgcaacgcataaacgacacatgaaagacctagtagcaagctactataatagtctctccccc 28366195  T
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtc-cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 234  Q
    | ||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366196 ttaaaaaagtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 28366295  T
Q  235 gaaaggtatgagttgaaagatgggctcgttgctgcttttatat 277  Q
    |||||||||||||||||||| ||| |||   ||||||||||||    
T  28366296 gaaaggtatgagttgaaagaggggttcgcatctgcttttatat 28366338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 11872481 - 11872585
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    ||||||||||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  11872481 aaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggccgagaa 11872580  T
Q  238 aggta 242  Q
    |||||    
T  11872581 aggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 37422247 - 37422175
Alignment:
Q  167 ttggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaag 239  Q
    |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  37422247 ttggaccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 28698625 - 28698549
Alignment:
Q  173 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 249  Q
    ||||||||| |||||||| |||||| || | |||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28698625 cacatatcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 14667007 - 14667083
Alignment:
Q  28 aaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcct 104  Q
    |||||||| | ||||  ||||||||||||||||  ||||||||||||||||||||| || |||||| ||||||||||    
T  14667007 aaaaatttgagcttggattggtggggtgcgccaagccaatgctatagtgcaacacactggcaacactcgagaagcct 14667083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 14703180 - 14703133
Alignment:
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaact 192  Q
    ||||||||||||||||| || |||||||||||||||| ||||||||||    
T  14703180 taatttaatatcgtgtggactattggtccacatatcaaatattaaact 14703133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 7448425 - 7448486
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataa 197  Q
    |||||||||||||| |||||||| | |  |||| | ||||||||||||||||||||| ||||    
T  7448425 tcaaaaaagtaattcaatatcgtataattcatttgaccacatatcagatattaaactaataa 7448486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 36 - 301
Target Start/End: Original strand, 10944297 - 10944561
Alignment:
Q  36 aaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnn 135  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| || |    |||| | ||||||||||||||||||||| ||| |||| |           
T  10944297 aaacttgaattggtggggtgcgccaaaccaatgctatagtgcaacgcaatagtgacactcaagaagcctagtagcaagctactaaaatggcttctcccca 10944396  T
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10944397 tcaaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatcttagccaaaaggtcgag 10944496  T
Q  236 aaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttct 301  Q
    |||||||||||||  || ||| ||||  |  |||||||||||| ||||||||||| |||| |||||    
T  10944497 aaaggtatgagttacaacatgagctc-ctattgcttttatatctgacatgttctcggttgttttct 10944561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 49 - 278
Target Start/End: Original strand, 41841064 - 41841292
Alignment:
Q  49 tggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaagtaat 148  Q
    ||||||||||||| ||| ||| |||||||||||||| | | |||| ||||||||| | ||||||||||     ||||| |       |||||||||||||    
T  41841064 tggggtgcgccagccca-tgcaatagtgcaacacataggcgacactcgagaagcccaatagcaagctattggggtggcttctccccatcaaaaaagtaat 41841162  T
Q  149 ttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 248  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841163 ttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 41841262  T
Q  249 gaaagatgggctcgttgctgcttttatatc 278  Q
    |||||||||| | | | |||||||||||||    
T  41841263 gaaagatgggttggcttctgcttttatatc 41841292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 44879092 - 44878950
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879092 tcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 44878993  T
Q  236 aaaggtatgagttgaaagatgggctcgttgctgcttttatatc 278  Q
    |||||||||||||||| | ||||||||   |||||||||||||    
T  44878992 aaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 44880829 - 44880971
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880829 tcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 44880928  T
Q  236 aaaggtatgagttgaaagatgggctcgttgctgcttttatatc 278  Q
    |||||||||||||||| | ||||||||   |||||||||||||    
T  44880929 aaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44880971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 40054512 - 40054312
Alignment:
Q  45 ttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaag 144  Q
    ||||||||||||||||  |  |||| ||||||||||||||   | ||||   ||||||| | ||||||||||   |||||||||       |||||||||    
T  40054512 ttggtggggtgcgccaagcttatgcaatagtgcaacacataagcgacacttaagaagcccaatagcaagctattgaagtggcctctccccctcaaaaaag 40054413  T
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 244  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054412 taatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 40054313  T
Q  245 a 245  Q
    |    
T  40054312 a 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 37679953 - 37679757
Alignment:
Q  46 tggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaagt 145  Q
    |||||||||||||||||||| |||||||||||||||||  | | ||||| |||| ||| | ||||||||||||   |||||||       |||| |||      
T  37679953 tggtggggtgcgccagaccattgctatagtgcaacacaaaggcgacaca-gagaggcccaatagcaagctaccgtggtggcctctccccctcaataaata 37679855  T
Q  146 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 243  Q
    |||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679854 aatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 37682156 - 37682057
Alignment:
Q  146 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 245  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 42555090 - 42555198
Alignment:
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 244  Q
    ||||||||||||||||||  |||||  |||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||  | |||||||||||    
T  42555090 taatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattctgcacttgatcttagccaaaagatcaagaaaggtatg 42555189  T
Q  245 agttgaaag 253  Q
    |||||||||    
T  42555190 agttgaaag 42555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 44582962 - 44582870
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 228  Q
    ||||||||||||||||||||| |   | ||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44582962 tcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 42220880 - 42220985
Alignment:
Q  172 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgctt 271  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||| |  |||||   ||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgctt 42220978  T
Q  272 ttatatc 278  Q
    |||||||    
T  42220979 ttatatc 42220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 42092093 - 42092010
Alignment:
Q  172 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 256  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| || |||| ||||||||  ||||||||||||||| |||||||    
T  42092093 ccacatatcagatattaaactgataagaacaaatattacacttaattttag-caaaaggcaaagaaaggtatgagtttaaagatg 42092010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 42872514 - 42872564
Alignment:
Q  202 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 252  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 44583162 - 44583110
Alignment:
Q  139 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaact 192  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  44583162 aaaaagtaatttaatatcgtgtgtaccatt-gttcacatatcagatattaaact 44583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 90 - 279
Target Start/End: Original strand, 10795842 - 10796031
Alignment:
Q  90 acacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaa 189  Q
    ||||| |||||||||| ||||||||||   ||||||| |       ||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  10795842 acacatgagaagcctaatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaa 10795941  T
Q  190 actgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||    
T  10795942 actgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 10796031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 279
Target Start/End: Original strand, 10791604 - 10791793
Alignment:
Q  90 acacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaa 189  Q
    ||||| |||||||||| ||||||||||   ||||||| |       ||||||||||||||||||||| ||||| |||||||  |||||||||||||||||    
T  10791604 acacatgagaagcctaatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaa 10791703  T
Q  190 actgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | | ||||||||||||||    
T  10791704 actgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagttggcttctgcttttatatca 10791793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 30521351 - 30521242
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||  |||| ||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  30521351 tcaaaaaataaattgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaacagatactacacttgatctcagccaaaaggtcgag 30521252  T
Q  236 aaaggtatga 245  Q
    ||||||||||    
T  30521251 aaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 8875789 - 8875691
Alignment:
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 243  Q
    |||||||||||||||| | | ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  8875789 taatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 13136752 - 13136607
Alignment:
Q  47 ggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaagta 146  Q
    |||||||||||||| || |||||||||||||||| ||||  | ||||| |||||||  |||||||||||||   | ||||         |||||||||||    
T  13136752 ggtggggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggctcctccctctcaaaaaagta 13136653  T
Q  147 atttaatatcgtgtgaaccattggtccacatatcagatattaaact 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  13136652 atttaatatcgtgtggaccattggtccacatatcagatattaaact 13136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 11333339 - 11333273
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaaca 202  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||    
T  11333339 tcaaaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 21216131 - 21216032
Alignment:
Q  139 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 238  Q
    |||||||||||||||||  |||||  |||||  |||||||| |||||||||||||||||||| |||| ||| || ||||||||| |||||| || |||||    
T  21216131 aaaaagtaatttaatattttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatcttagtcaaaagaccaagaaa 21216032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 10509552 - 10509479
Alignment:
Q  44 tttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctac 117  Q
    ||||||||||||| |||  |||||||||||||||||| ||||  | |||||| ||||||| |||||||||||||    
T  10509552 tttggtggggtgctccaagccaatgctatagtgcaacgcattagcgacacacaagaagccgagtagcaagctac 10509479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 258
Target Start/End: Original strand, 11652300 - 11652512
Alignment:
Q  45 ttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctnnnnnnntcaaaaaag 144  Q
    ||||||||||||||||| ||| ||| |||||||||||||| | | |||| | ||||||| | ||||||||||    |||||| |       ||||||||     
T  11652300 ttggtggggtgcgccagccca-tgcaatagtgcaacacataggcgacactcaagaagcccaatagcaagctattggagtggcttctccccctcaaaaaaa 11652398  T
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 244  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652399 taatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 11652498  T
Q  245 agttgaaagatggg 258  Q
    |||| |||||||||    
T  11652499 agttaaaagatggg 11652512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 136 - 279
Target Start/End: Original strand, 49106527 - 49106670
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106527 tcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 49106626  T
Q  236 aaaggtatgagttgaaagatgggctcgttgctgcttttatatca 279  Q
    ||||||||||||||||||   |||| | | ||||||||||||||    
T  49106627 aaaggtatgagttgaaagggtggctggcttctgcttttatatca 49106670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 136 - 279
Target Start/End: Original strand, 50077197 - 50077340
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077197 tcaaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 50077296  T
Q  236 aaaggtatgagttgaaagatgggctcgttgctgcttttatatca 279  Q
    ||||||||||||||||||| | ||| | | ||||||||||||||    
T  50077297 aaaggtatgagttgaaagaagagctggcttctgcttttatatca 50077340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 136 - 279
Target Start/End: Original strand, 49108631 - 49108774
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108631 tcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 49108730  T
Q  236 aaaggtatgagttgaaagatgggctcgttgctgcttttatatca 279  Q
    ||||||||||||||||| || |||| | | ||| ||||||||||    
T  49108731 aaaggtatgagttgaaatataggctggcttctgattttatatca 49108774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 26998740 - 26998846
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998740 aaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 26998839  T
Q  238 aggtatg 244  Q
    |||||||    
T  26998840 aggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 26984668 - 26984773
Alignment:
Q  139 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 238  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984668 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 26984767  T
Q  239 ggtatg 244  Q
    ||||||    
T  26984768 ggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 3461142 - 3461258
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    ||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461142 aaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 3461241  T
Q  238 aggtatgagttgaaaga 254  Q
    |||||||| ||||||||    
T  3461242 aggtatgaattgaaaga 3461258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 48205940 - 48205832
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||| |||||||||| | ||||||||||||||||||||| |||||||| |||||||||||    
T  48205940 tcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagctaaaaggccgag 48205841  T
Q  236 aaaggtatg 244  Q
    |||||||||    
T  48205840 aaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 21503787 - 21503706
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgat 217  Q
    |||||||| |||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  21503787 tcaaaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 41013548 - 41013651
Alignment:
Q  140 aaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaag 239  Q
    |||| |||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||| ||| || |||| |||||| ||||||||||||||||     
T  41013548 aaaaataatttaataccatgtgaacccttggtccacatatcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaaa 41013647  T
Q  240 gtat 243  Q
    ||||    
T  41013648 gtat 41013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 26982646 - 26982549
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    |||||| | |||||||||| ||| || ||||| ||||||||| ||||| |||||| ||||   ||||| |||||||||||||||||||| ||||||||||    
T  26982646 aaaaaaatgatttaatatcatgtaaatcattgatccacatattagatactaaactaataa---cagatgctacacttgatcttagccaagaggccgagaa 26982550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatacta 209  Q
    |||||||||||||||||||||||| ||  |||| |   |||||||| |||||||||||||||||||| ||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 279
Target Start/End: Original strand, 49533638 - 49533765
Alignment:
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 244  Q
    |||||||||||||||||| | ||||    ||||||||||||||||     |||||||||||| | |||||||||||||||||  ||||||||||||||||    
T  49533638 taatttaatatcgtgtgacctattgagtaacatatcagatattaa-----taagaacagata-tgcacttgatcttagccaag-ggccgagaaaggtatg 49533730  T
Q  245 agttgaaagatgggctcgttgctgcttttatatca 279  Q
     |||| || | ||||| | | ||| ||||||||||    
T  49533731 ggttggaataagggctggcttctggttttatatca 49533765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 6431957 - 6432010
Alignment:
Q  185 attaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 238  Q
    |||||||| ||||||| |||||||| || ||||||||||||| |||||||||||    
T  6431957 attaaactaataagaagagatactaaacctgatcttagccaataggccgagaaa 6432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 51578352 - 51578274
Alignment:
Q  139 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 218  Q
    |||||||||||||||||||||||| | ||||  ||| |||| ||||| | |||| ||||||||| ||| |||||||||||    
T  51578352 aaaaagtaatttaatatcgtgtgatctattgaaccatatattagata-tgaactaataagaacatatattacacttgatc 51578274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 54677633 - 54677590
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatca 181  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatatca 54677590  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 34481105 - 34481155
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatatta 188  Q
    ||||||||||||||||||| |||| | ||||| | ||||||||||||||||    
T  34481105 aaaaaagtaatttaatatcttgtggatcattgattcacatatcagatatta 34481155  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  204 atactacacttgatcttagccaaaaggccgagaaagg 240  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 7525185 - 7524961
Alignment:
Q  28 aaaaatttaaacttgatttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcc 127  Q
    ||||| |||||||  | |||||||||||||||   || |||| |||||||||| ||| ||| ||||| ||||| || || |||||||||| || | ||||    
T  7525185 aaaaaattaaactaaaattggtggggtgcgcctagcccatgcaatagtgcaacgcatggacgacacatgagaaacccagcagcaagctactaaggcggcc 7525086  T
Q  128 tnnnnnnntcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 227  Q
    |       ||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7525085 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 7524986  T
Q  228 aggccgagaaaggtatgagttgaaa 252  Q
    |||||||||||||||||| ||||||    
T  7524985 aggccgagaaaggtatgacttgaaa 7524961  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 1716451 - 1716570
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccatt-ggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 236  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716451 aaaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 1716550  T
Q  237 aaggtatgagttgaaagatg 256  Q
    |||||||||||| |||||||    
T  1716551 aaggtatgagttaaaagatg 1716570  T

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Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 3643747 - 3643640
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643747 aaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 3643648  T
Q  238 aggtatga 245  Q
    ||||||||    
T  3643647 aggtatga 3643640  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 4103352 - 4103249
Alignment:
Q  138 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 237  Q
    ||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||    
T  4103352 aaaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaatgctgagaa 4103253  T
Q  238 aggt 241  Q
    ||||    
T  4103252 aggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 5350738 - 5350672
Alignment:
Q  146 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacac 212  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||||||| || |||||||||||    
T  5350738 aatttaatatcgtgtggaccattgtcccacatatcagatattaaactgataacaatagatactacac 5350672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 16037966 - 16037861
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||||| ||| ||||| | |||| ||||| |||||||  | ||||||||| |||||||||||||||||||  ||| |||||||    
T  16037966 tcaaaaaagtaatttaatatcgtttgacccattagaccac-tatcaaatattaagataataagaacaaatactacacttgatcttag-aaaacggccgag 16037869  T
Q  236 aaaggtat 243  Q
    ||| ||||    
T  16037868 aaaagtat 16037861  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 19261152 - 19261216
Alignment:
Q  174 acatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 238  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||  |||||||| ||||||    
T  19261152 acatatcagatatttaacggataagaacatatattacacttgatcttaatcaaaaggctgagaaa 19261216  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 3643839 - 3643769
Alignment:
Q  45 ttggtggggtgcgccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagcta 116  Q
    ||||||||||||||||| ||||||| ||||||||||||||   |||||| |||||| || | ||||||||||    
T  3643839 ttggtggggtgcgccag-ccaatgcaatagtgcaacacataagcaacactcgagaaacccaatagcaagcta 3643769  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 13636412 - 13636365
Alignment:
Q  145 taatttaatatcgtgtgaaccattggtccacatatcagatattaaact 192  Q
    |||||||||| |||||| ||| ||| ||||||||||||||||||||||    
T  13636412 taatttaataccgtgtggaccgttgatccacatatcagatattaaact 13636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 27134620 - 27134511
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 235  Q
    ||||||||||||||||||||||| |||  |||| | ||||||||||||||||||||  |||||||||||||||| | ||||||||||  ||||||||||     
T  27134620 tcaaaaaagtaatttaatatcgtttgactcattagaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaaaggccgaa 27134521  T
Q  236 aaaggtatga 245  Q
    ||||||||||    
T  27134520 aaaggtatga 27134511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 8128241 - 8128149
Alignment:
Q  146 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaag 239  Q
    |||||||||| |||||| ||||||| |||||||||| |||||||||| | ||||||| ||||||||||| |||||| |||||||  ||||||||    
T  8128241 aatttaatattgtgtga-ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaaccaaaagaacgagaaag 8128149  T

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Target: scaffold0549 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 5505 - 5447
Alignment:
Q  136 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactga 194  Q
    ||||||||  ||||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  5505 tcaaaaaataaatttaatatcgtgtgaacaattggcccatatatcagatattaaactga 5447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  197 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 243  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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