View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_39 (Length: 305)

Name: NF19951_low_39
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_39
NF19951_low_39
[»] chr2 (4 HSPs)
chr2 (205-302)||(11184785-11184882)
chr2 (245-305)||(11171315-11171375)
chr2 (243-302)||(11191862-11191921)
chr2 (272-305)||(10794015-10794048)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 11184785 - 11184882
Alignment:
Q  205 acatatattaaaatttgttttaagtctcagttagaatctgtggaacataccagaactgaggaaatgttagcaccaagtgcaagaatatcagcacaaga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11184785 acatatattaaaatttgttttaagtctcagttagaatctgtggaacataccagaactgaggaaatgttagcaccaagtgcaagaatatcagcacaaga 11184882  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 11171375 - 11171315
Alignment:
Q  245 tggaacataccagaactgaggaaatgttagcaccaagtgcaagaatatcagcacaagaaac 305  Q
    |||||||||||||||| |||||||| | |||| |||| |||||||||||||||||||||||    
T  11171375 tggaacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaac 11171315  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 11191862 - 11191921
Alignment:
Q  243 tgtggaacataccagaactgaggaaatgttagcaccaagtgcaagaatatcagcacaaga 302  Q
    |||| ||| ||||||||| |||||||  ||||||||||||||||||||||| ||||||||    
T  11191862 tgtgaaacgtaccagaacggaggaaacattagcaccaagtgcaagaatatctgcacaaga 11191921  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 10794015 - 10794048
Alignment:
Q  272 tagcaccaagtgcaagaatatcagcacaagaaac 305  Q
    ||||| ||||||||||||||||||||||||||||    
T  10794015 tagcagcaagtgcaagaatatcagcacaagaaac 10794048  T

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