View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_4 (Length: 672)
Name: NF19951_low_4
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 13 - 649
Target Start/End: Complemental strand, 53126157 - 53125530
Alignment:
| Q |
13 |
aatatctatacgctgagatgtgatgtgattgagtgcacgcgtagaattattttaatcctaataatgcatacaaattacattttctttaatgcaataagaa |
112 |
Q |
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| T |
53126157 |
aatatctatatgctgagatgtgatgtgattgagtgcacgcgtagaattattttaatcctaataatgcatacaaattacattttctttaatgcaataagaa |
53126058 |
T |
|
| Q |
113 |
taactaattggtctacgttt-cctgcatattaggatcggcaatcgggggatgatgaagcgatggccttagacgaggaattttgcactgctttggagtatg |
211 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53126057 |
taactaattggtctacgttttcctgcatattaggatcggcaatcgggggatgatgaagcgatggccttagacgaggaattttgcactgctttggagtatg |
53125958 |
T |
|
| Q |
212 |
gtatgccaccaactggcggttggggtatgggtattgataggttgacgatgttactgactgattcacagaacataaaggttcttgctctttctcattctca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53125957 |
gtatgccaccaactggcggttggggtatgggtattgataggttgacgatgttactgactgattcacagaacataaaggttcttgctctttctcattctca |
53125858 |
T |
|
| Q |
312 |
ttctctgcatgttaaatttgtttttgtaaattcttacatttctggttccttttgggttggttacaggaagttattctcttccatgccatgaaacctcaag |
411 |
Q |
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| T |
53125857 |
ttctctgcatgttaaatttgtttttgtaaattcttacatttttggttccttttgggttggttacaggaagttattctcttccatgccatgaaacctcaag |
53125758 |
T |
|
| Q |
412 |
atgtaccttcagctaaaggtttgtaatgtacatgccttcaccttcttttatgtttatttagatatgtttctcatgttggtcttcttcactatacacaatt |
511 |
Q |
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| T |
53125757 |
atgtaccttcagctaaaggtttgtaatgtacatgccttcaccttcttttatgtttatttagatatgtttctcatgttggtcttcttcactatacacaatt |
53125658 |
T |
|
| Q |
512 |
caannnnnnnnnnnnnnnncctaggcttaatatttttccctacattgatttcaggaacttgagaaattcaagatgatcagaaaccaaattgcatgtaaat |
611 |
Q |
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| T |
53125657 |
caa----------ttttttcctaggcttaatatttttccctacattgatttcaggaacttgagaaattcaagatgatcagaaaccaaattgcatgtaaat |
53125568 |
T |
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| Q |
612 |
aagttgggatcttgaaatcttttattgagaatcaagtt |
649 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
53125567 |
aagttgggatcttgaaatcttttattgagaatcaagtt |
53125530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 130 - 460
Target Start/End: Complemental strand, 53108239 - 53107919
Alignment:
| Q |
130 |
tttcctgcatattaggatcggcaatcgggggatgatgaagcgatggccttagacgaggaattttgcactgctttggagtatggtatgccaccaactggcg |
229 |
Q |
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| T |
53108239 |
tttcgtgcatgtcaggatcgacaatcaggcgatgatgaggcaatggccttggatgaaggtttttgtactgctctggagtatggtttgccgccaactggtg |
53108140 |
T |
|
| Q |
230 |
gttggggtatgggtattgataggttgacgatgttactgactgattcacagaacataaaggttcttgctctttctcattctcattctctgcatgttaaatt |
329 |
Q |
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| T |
53108139 |
gttggtgtttgggcattgatcggttgacaatgatactgactgattcacagaatatcaaggttcttgctttttctcattttc------tgcatgtttaatt |
53108046 |
T |
|
| Q |
330 |
tgtttttgtaaattcttacatttctggttccttttgggttggttacaggaagttattctcttccatgccatgaaacctcaagatgtaccttcagctaaag |
429 |
Q |
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| T |
53108045 |
tgtttttctaaattcttatattctttcttccttttgggtt----acaggaagttcttctcttccctgccatgaaacctcaagatgtaccttcaactaaag |
53107950 |
T |
|
| Q |
430 |
gtttgtaatgtacatgccttcaccttctttt |
460 |
Q |
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| T |
53107949 |
gtttgtattgtacatgcattccccttctttt |
53107919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 594
Target Start/End: Complemental strand, 53107825 - 53107771
Alignment:
| Q |
541 |
atatttttccctacatt-gatttcaggaacttgagaaattcaagatgatcagaaa |
594 |
Q |
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||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
53107825 |
atatttttccctatatttgatttcaggaacttgaggaattcaagatgatcagaaa |
53107771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 143 - 291
Target Start/End: Original strand, 15841483 - 15841631
Alignment:
| Q |
143 |
aggatcggcaatcgggggatgatgaagcgatggccttagacgaggaattttgcactgctttggagtatggtatgccaccaactggcggttggggtatggg |
242 |
Q |
| |
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||||||||||||| || || || ||||| |||||||| ||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
15841483 |
aggatcggcaatcaggtgacgacgaagcaatggccttggacgaaacattttgcacggctttggagtatggtttgccaccaactgctggttggggtttggg |
15841582 |
T |
|
| Q |
243 |
tattgataggttgacgatgttactgactgattcacagaacataaaggtt |
291 |
Q |
| |
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||||||| ||||||| |||||| ||||||||||||| || || |||||| |
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| T |
15841583 |
tattgatcggttgactatgttattgactgattcacaaaatatcaaggtt |
15841631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 26161193 - 26161285
Alignment:
| Q |
200 |
ctttggagtatggtatgccaccaactggcggttggggtatgggtattgataggttgacgatgttactgactgattcacagaacataaaggttc |
292 |
Q |
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| T |
26161193 |
ctttggagaatggtatgccaccaactggtggttgtggtttgggtattgattacttgaccatgttattgactgattcacaaaatattaaggttc |
26161285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 15841706 - 15841753
Alignment:
| Q |
368 |
ttggttacaggaagttattctcttccatgccatgaaacctcaagatgt |
415 |
Q |
| |
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|||||||||||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
15841706 |
ttggttacaggaggttcttctcttccctgccatgaaacctcaagatgt |
15841753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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