View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_41 (Length: 298)
Name: NF19951_low_41
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 41484131 - 41483838
Alignment:
| Q |
1 |
aatttagttctcctgtaaatttatcactttcaaagaaatgtgttaaaattttagaaattgacctatcacaaaagtgtgttcatgagagggttaaaaggag |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484131 |
aatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcacaaaagtgtgttcatgagagggttaaaaggag |
41484032 |
T |
|
| Q |
101 |
agaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484031 |
agaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatct |
41483932 |
T |
|
| Q |
201 |
acttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctttgatactt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41483931 |
acttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatccttagatactt |
41483838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 40751345 - 40751044
Alignment:
| Q |
1 |
aatttagttctcctgtaaatttatcactttcaaagaaatgtgttaaaattttagaaattgacctatcac--aaaagtgtgttcatgagagggttaaaa-- |
96 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| | ||||||||||||| |
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|
| T |
40751345 |
aatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaacagac-tatcaggaaaaagtgtgtttaagagagggttaaaact |
40751247 |
T |
|
| Q |
97 |
-----ggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattg |
191 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
40751246 |
taaaaggagagaattattcatctagcattgctaccataaattcaaagagccaaaatacattacatgtttcttctcaaaatatagcttggttctctcattg |
40751147 |
T |
|
| Q |
192 |
tgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctttgata |
291 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40751146 |
tgattatctgcttgacgcttctgtagatccttctcacgggacataagttcattcctccgagcttccagttccagcctggatttttcatgatccttagata |
40751047 |
T |
|
| Q |
292 |
ctt |
294 |
Q |
| |
|
||| |
|
|
| T |
40751046 |
ctt |
40751044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 41477090 - 41476795
Alignment:
| Q |
1 |
aatttagttctcctgtaaatttatcactttcaaagaaatgtgttaaaatttta-gaaattgacctatcacaaaa-gtgtgttcatgagagggttaaaagg |
98 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| | ||||| ||||| ||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
41477090 |
aatttagttctcctgtaaattgatcactttcaaagtaatgtgttatatttttaagaaatagacctatcagaaaaagtgtgttcaagagagggttaaaagg |
41476991 |
T |
|
| Q |
99 |
agagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattat |
198 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| | |||||||| ||||||||||||| || |||||||| |||||||||| | |||||||| |||||| |
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|
| T |
41476990 |
agagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttctctcattgagattat |
41476891 |
T |
|
| Q |
199 |
ctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctttgatactt |
294 |
Q |
| |
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|| ||| |||||||||||||||||| |||||||| |||| || |||||||||| |||||||||| |||| ||| ||||||||||||| ||||||| |
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| T |
41476890 |
ctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatccttcgatactt |
41476795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 286
Target Start/End: Complemental strand, 41470007 - 41469791
Alignment:
| Q |
70 |
aaaagtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaa |
169 |
Q |
| |
|
||||||||||||| ||||| |||||| |||| ||| | |||||||||||||||| ||||||| |||||| ||| | |||||||| | ||| ||| |
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| T |
41470007 |
aaaagtgtgttcaagagagcattaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaattacatggcccgtctgaaa |
41469908 |
T |
|
| Q |
170 |
atatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctg |
269 |
Q |
| |
|
|||| |||| | |||| ||| ||||||| ||| || ||||||||||||||| ||||| || |||||||| |||||||||||||| |||| || || |
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| T |
41469907 |
atattgcttatttctctcgatgtaattatcttcttgacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatg |
41469808 |
T |
|
| Q |
270 |
gctttttcatgatcctt |
286 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
41469807 |
gctttttcataatcctt |
41469791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 291
Target Start/End: Original strand, 16408850 - 16408991
Alignment:
| Q |
150 |
attacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctcc |
249 |
Q |
| |
|
|||||||||| |||||||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||| || ||| |
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| T |
16408850 |
attacatgtttcttctcaagatatagcttatttctctcattgtgattatctgcttgacgcttctgcagatccttttcacgggacataagctcatttttcc |
16408949 |
T |
|
| Q |
250 |
gagcttccagttccagcctggctttttcatgatcctttgata |
291 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
16408950 |
aagcttctagttccagcctggctttttcatgatccttggata |
16408991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 286
Target Start/End: Complemental strand, 52472101 - 52471933
Alignment:
| Q |
118 |
attgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcag |
217 |
Q |
| |
|
||||||| |||||| | ||||||| ||||| ||||| |||| | |||||| ||||||||| ||||||||| ||||||||||| |||||||||||| |
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|
| T |
52472101 |
attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag |
52472002 |
T |
|
| Q |
218 |
atccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
286 |
Q |
| |
|
|||| | |||||||| ||||| || ||||||| |||||||||||||| | ||||||||||||||||||| |
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|
| T |
52472001 |
atccatttcacgggacataagttcattcctcctagcttccagttccaacatggctttttcatgatcctt |
52471933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 286
Target Start/End: Original strand, 16413236 - 16413410
Alignment:
| Q |
112 |
tttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgctt |
211 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||| |||||||||| | | |||||||||||| | || || ||||||||||| ||| ||||| |
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|
| T |
16413236 |
tttagcattgctaccataaattcaaagagctaaaataaattacatgttttgtttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgctt |
16413335 |
T |
|
| Q |
212 |
ctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
286 |
Q |
| |
|
|||||||||||| || || | ||||| || |||||| | |||||||||||||| |||||||||| |||||||| |
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|
| T |
16413336 |
ctgcagatccttttctcgtaacataagttcattcctcagcgcttccagttccagtatggctttttcttgatcctt |
16413410 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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