View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_42 (Length: 296)
Name: NF19951_low_42
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 38341973 - 38341846
Alignment:
| Q |
119 |
cttgaattaactaggattcagtttaaacaattgtagatggaaatttaaaagataaagttgaaactagctgaatatataagaaagattcagaaataaacaa |
218 |
Q |
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|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38341973 |
cttgaattaactaggattcactttaaacaattctaaatggaaatttaaaagataaagttgaaactagctgaatatataagaaagattcagaaataaacaa |
38341874 |
T |
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| Q |
219 |
atgtaaattttttctaatttttcgaact |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38341873 |
atgtaaattttttctaatttttcgaact |
38341846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 38446166 - 38446039
Alignment:
| Q |
119 |
cttgaattaactaggattcagtttaaacaattgtagatggaaatttaaaagataaagttgaaactagctgaatatataagaaagattcagaaataaacaa |
218 |
Q |
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|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446166 |
cttgaattaactaggattcactttaaacaattctaaatggaaatttaaaagataaagttgaaactagctgaatatataagaaagattcagaaataaacaa |
38446067 |
T |
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| Q |
219 |
atgtaaattttttctaatttttcgaact |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38446066 |
atgtaaattttttctaatttttcgaact |
38446039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 38342084 - 38342034
Alignment:
| Q |
11 |
aatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342084 |
aatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
38342034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 38446277 - 38446227
Alignment:
| Q |
11 |
aatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446277 |
aatattgttacttttacgtgtaaactatgatatatagtactaactaactaa |
38446227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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