View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_43 (Length: 290)
Name: NF19951_low_43
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_43 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 14369390 - 14369112
Alignment:
| Q |
17 |
tatgttacatttaatccaggattggagaggaggatgccacatcacctctttgataatcggtgctttagggtggtgaatagaaacattaaaaatcttgatc |
116 |
Q |
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| T |
14369390 |
tatgttacatttgatc-aggaatggagaggagggtgccacatcacctctttgataatcggtgctctagggtggtgaacagaaacattaaaattcttgatc |
14369292 |
T |
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| Q |
117 |
a-----aagtctctgatagaattagaagatgttttctttgttgtctttcctgttagggctgtgctcgaaataatcacagaaatggaagatttccagttga |
211 |
Q |
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| T |
14369291 |
agggtaaagtctctgattgaattagaagatgttttctttgttgtgtttcatgctagggctgtgctcgaaataatcatggaaatggaagatttccagttga |
14369192 |
T |
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| Q |
212 |
tggttttgcgattaaatctagctcagtttctagcattccatatgacata-aaaagattaaccaaagctgatagcaccacc |
290 |
Q |
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| T |
14369191 |
tggttttgctattaaatctagcttggtttctagcattccatatgacataaaaaagatcaaccaaagctgatagcaccacc |
14369112 |
T |
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