View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_46 (Length: 283)
Name: NF19951_low_46
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 17120981 - 17121238
Alignment:
| Q |
16 |
cactaagaaatttttatccctttgcattcccatgtttctacatcgtgtttaaactgtttctacaatcctatttttcataaaaatctaggcatgttgtata |
115 |
Q |
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| T |
17120981 |
cactaagaaatttttatccctttgcattcccatgtttctacatcgtgtttaaactgtttctacaatcctatttttcataaaaatctaggcatgttgtata |
17121080 |
T |
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| Q |
116 |
gaaagcatacatcgattgcttctctcccttttgattcttatgctgattgctcctatatttgttgattcttctttgtttgattagtcttctctctattggt |
215 |
Q |
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| T |
17121081 |
gaaagcatacattgattgcttctctcccttttgattcttatgctgattgctcctatatttgttgattcttctttgtttgattggtcttctctctattggt |
17121180 |
T |
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| Q |
216 |
ctattctgtttgaatgtttctctccctattggttattgtgtttggttgcttctctctg |
273 |
Q |
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| T |
17121181 |
ctattctgtttgaatgtttatctccctattgattattgtgtttggttgcttctctctg |
17121238 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 8574444 - 8574533
Alignment:
| Q |
129 |
gattgcttctctcccttttgattcttatgct-gattgctcctatatttgttgattcttctttgtttgattagtcttctctctattggtct |
217 |
Q |
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| T |
8574444 |
gattgcttctctcccttttgattattctgtttgattgctcctctatatgttgattaatatttgtttgtttggtcttctccctattggtct |
8574533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 12284983 - 12285020
Alignment:
| Q |
173 |
tttgttgattcttctttgtttgattagtcttctctcta |
210 |
Q |
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| T |
12284983 |
tttgttgattcttctttgtttgatttctcttctctcta |
12285020 |
T |
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