View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_47 (Length: 280)

Name: NF19951_low_47
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_47
NF19951_low_47
[»] chr3 (6 HSPs)
chr3 (1-251)||(3353968-3354221)
chr3 (183-242)||(3458336-3458395)
chr3 (183-236)||(50345697-50345750)
chr3 (183-242)||(53888458-53888518)
chr3 (180-235)||(32721108-32721163)
chr3 (183-235)||(48444485-48444537)
[»] chr5 (3 HSPs)
chr5 (183-251)||(29022580-29022649)
chr5 (183-237)||(39428918-39428972)
chr5 (183-228)||(6373123-6373168)
[»] chr2 (7 HSPs)
chr2 (189-242)||(39181049-39181102)
chr2 (183-237)||(27987641-27987699)
chr2 (183-237)||(28074174-28074232)
chr2 (184-237)||(31584817-31584870)
chr2 (183-237)||(15803164-15803219)
chr2 (183-234)||(44954047-44954098)
chr2 (183-235)||(9087515-9087567)
[»] chr6 (4 HSPs)
chr6 (183-237)||(4089447-4089501)
chr6 (204-237)||(33676999-33677032)
chr6 (183-237)||(4464922-4464976)
chr6 (184-232)||(5613475-5613523)
[»] chr7 (8 HSPs)
chr7 (183-234)||(30301974-30302025)
chr7 (195-235)||(31180028-31180068)
chr7 (185-242)||(7391461-7391518)
chr7 (199-242)||(23772606-23772649)
chr7 (183-242)||(33187896-33187955)
chr7 (204-234)||(38987375-38987405)
chr7 (183-242)||(1277909-1277969)
chr7 (183-230)||(44487367-44487415)
[»] chr4 (10 HSPs)
chr4 (184-235)||(21443001-21443052)
chr4 (183-242)||(47063664-47063723)
chr4 (199-237)||(9119852-9119890)
chr4 (204-236)||(28879979-28880011)
chr4 (186-234)||(29576188-29576236)
chr4 (183-234)||(46669995-46670047)
chr4 (196-235)||(4442043-4442082)
chr4 (204-235)||(52430627-52430658)
chr4 (194-234)||(23902492-23902532)
chr4 (183-234)||(42650615-42650667)
[»] scaffold0471 (1 HSPs)
scaffold0471 (185-238)||(4698-4751)
[»] chr8 (6 HSPs)
chr8 (185-238)||(36106580-36106633)
chr8 (183-237)||(41455233-41455287)
chr8 (183-235)||(27085327-27085379)
chr8 (183-234)||(5911476-5911527)
chr8 (183-242)||(13406399-13406458)
chr8 (199-237)||(1839887-1839925)
[»] chr1 (6 HSPs)
chr1 (186-229)||(6537943-6537986)
chr1 (183-234)||(34552137-34552188)
chr1 (208-242)||(35619580-35619614)
chr1 (199-242)||(17556638-17556681)
chr1 (183-237)||(24436982-24437037)
chr1 (199-237)||(12625890-12625928)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 3354221 - 3353968
Alignment:
Q  1 tgatgtttgtagagatcgttgttaatattaaatgtgtaaaaagatatgatttgtattaattagaatctgagagtacaattagtatcatggatctgagtca 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  3354221 tgatgtttgtagagatcgttgttaatattaaatgtgtaagaagatatgatttgtattaattggaatccgagagtacaattagtatcatagatctgagtca 3354122  T
Q  101 g---tcgttcacaccaggtgtaagtttatttaattacctcaaatcttatctgccaattttgattgatccaatgactatgtttatgcaattttttaattcc 197  Q
    |   ||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3354121 ggattcgttcacaccagatgtaagtctatttaattacatcaaatcttatctgtcaattttgattgatccaatgactatgtttatgcaattttttaattcc 3354022  T
Q  198 tcaaacgaggagagttttatattttgaagaaaaataagcctcccatgttctcta 251  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3354021 ccaaacgaggagagttttatattttgaagaaaaataagcctcccatgttctcta 3353968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 3458336 - 3458395
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||||| |||| ||||||||||  ||||||||||||||||||||||||| ||||||    
T  3458336 caattttttagttccccaaacgaggacggttttatattttgaagaaaaataagtctccca 3458395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 50345697 - 50345750
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagc 236  Q
    ||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  50345697 caattctttagttccccaaacgaggagtgttttatattttgaagaaaaataagc 50345750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 53888518 - 53888458
Alignment:
Q  183 caattttttaattcctc-aaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||||| |||| | |||| ||||| ||||||||||||||||||||||||||| ||||    
T  53888518 caattttttagttcccccaaacaaggagggttttatattttgaagaaaaataagcccccca 53888458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 32721108 - 32721163
Alignment:
Q  180 atgcaattttttaattcctcaaacgaggagagttttatattttgaagaaaaataag 235  Q
    ||||||||||| | || | |||| || |||||||||||||||||||||||||||||    
T  32721108 atgcaatttttgagtttcccaaatgaagagagttttatattttgaagaaaaataag 32721163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 48444537 - 48444485
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataag 235  Q
    ||||||||||  ||| |||| |||||  |||||||||||||||||||||||||    
T  48444537 caattttttagatccccaaatgaggaaggttttatattttgaagaaaaataag 48444485  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 29022649 - 29022580
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcctccc-atgttctcta 251  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  29022649 caattttttagttccttaaatgaggagagttttatattttgaagaaaaataatcctcccaatgttctcta 29022580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 39428972 - 39428918
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    |||||||||| ||||||||| |||||   |||||||||||||||| |||||||||    
T  39428972 caattttttagttcctcaaatgaggaagattttatattttgaagataaataagcc 39428918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 6373168 - 6373123
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaa 228  Q
    |||||||||| |||| |||| |||||| ||||||||||||||||||    
T  6373168 caattttttagttccccaaatgaggagggttttatattttgaagaa 6373123  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 39181102 - 39181049
Alignment:
Q  189 tttaattcctcaaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39181102 tttagttcctcaaatgaggagagttttatattttgaagaaaaataagcctccca 39181049  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 27987699 - 27987641
Alignment:
Q  183 caattttttaattcctcaaacgagg----agagttttatattttgaagaaaaataagcc 237  Q
    |||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||    
T  27987699 caattttttagttcctcaaacgagggagaagagttttatattttgaagaaaaataagcc 27987641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 28074232 - 28074174
Alignment:
Q  183 caattttttaattcctcaaacgagg----agagttttatattttgaagaaaaataagcc 237  Q
    |||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||    
T  28074232 caattttttagttcctcaaacgagggagaagagttttatattttgaagaaaaataagcc 28074174  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 31584817 - 31584870
Alignment:
Q  184 aattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    ||||||||| |||| |||| |||||| |||||||||||||||||||||||||||    
T  31584817 aattttttagttccccaaatgaggagggttttatattttgaagaaaaataagcc 31584870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 15803219 - 15803164
Alignment:
Q  183 caattttttaattcctcaaac-gaggagagttttatattttgaagaaaaataagcc 237  Q
    |||||||||| |||| | ||| |||||| |||||||||||||||||||||||||||    
T  15803219 caattttttagttcccccaactgaggagggttttatattttgaagaaaaataagcc 15803164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 44954047 - 44954098
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataa 234  Q
    |||||||||| ||| | ||| |||||| ||||||||||||||||||||||||    
T  44954047 caattttttagttcttaaaatgaggagggttttatattttgaagaaaaataa 44954098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 9087515 - 9087567
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataag 235  Q
    |||||||| | |||| |||| |||||| |||||||||||||||||||| ||||    
T  9087515 caatttttcagttccccaaatgaggagggttttatattttgaagaaaattaag 9087567  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 4089447 - 4089501
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  4089447 caatttcttagttcctcaaatgaggagagttttatattttgaagaaaaataagcc 4089501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 33677032 - 33676999
Alignment:
Q  204 gaggagagttttatattttgaagaaaaataagcc 237  Q
    ||||||||||||||||||||||||||||||||||    
T  33677032 gaggagagttttatattttgaagaaaaataagcc 33676999  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 4464976 - 4464922
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    |||||||||| |||| |||| |||||  ||| |||||||||||||||||||||||    
T  4464976 caattttttagttccccaaatgaggaaggttgtatattttgaagaaaaataagcc 4464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 5613523 - 5613475
Alignment:
Q  184 aattttttaattcctcaaacgaggagagttttatattttgaagaaaaat 232  Q
    ||||||||  |||| |||| |||||| ||||||||||||||||||||||    
T  5613523 aatttttttgttccccaaatgaggagggttttatattttgaagaaaaat 5613475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 30301974 - 30302025
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataa 234  Q
    |||||||||| || |||||| |||||||||||||||||||||||||||||||    
T  30301974 caattttttagtttctcaaatgaggagagttttatattttgaagaaaaataa 30302025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 31180028 - 31180068
Alignment:
Q  195 tcctcaaacgaggagagttttatattttgaagaaaaataag 235  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  31180028 tcctcaaatgaggagagttttatattttgaagaaaaataag 31180068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 7391461 - 7391518
Alignment:
Q  185 attttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||| |||| ||||  ||||| ||||||||||||||||||||||||||| ||||    
T  7391461 attttttagttccccaaataaggagggttttatattttgaagaaaaataagcccccca 7391518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 23772606 - 23772649
Alignment:
Q  199 caaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||    
T  23772606 caaatgaggagatttttatattttgaagaaaaataagtctccca 23772649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 33187896 - 33187955
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||||| ||||||||| |||||   |||||||||||||||||||| ||||| ||||    
T  33187896 caattttttagttcctcaaatgaggatgattttatattttgaagaaaaacaagcccccca 33187955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 38987405 - 38987375
Alignment:
Q  204 gaggagagttttatattttgaagaaaaataa 234  Q
    |||||||||||||||||||||||||||||||    
T  38987405 gaggagagttttatattttgaagaaaaataa 38987375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 1277969 - 1277909
Alignment:
Q  183 caattttttaattcctcaaac-gaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||||| |||| ||||  |||||  ||||||||||||||||||||||||||| ||||    
T  1277969 caattttttagttccccaaaatgaggatggttttatattttgaagaaaaataagcccccca 1277909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 44487367 - 44487415
Alignment:
Q  183 caattttttaattcctc-aaacgaggagagttttatattttgaagaaaa 230  Q
    |||||||||| |||||| ||| ||||||| |||||||||||||||||||    
T  44487367 caattttttagttcctctaaatgaggagaattttatattttgaagaaaa 44487415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 21443052 - 21443001
Alignment:
Q  184 aattttttaattcctcaaacgaggagagttttatattttgaagaaaaataag 235  Q
    ||||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  21443052 aattttttagttcctcaaatgaggagggttttatattttgaagaaaaataag 21443001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 47063723 - 47063664
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||||| |||| |||| |||||| |||||||||||| |||||||||||||| ||||    
T  47063723 caattttttagttccccaaatgaggagggttttatattttaaagaaaaataagcccccca 47063664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 9119852 - 9119890
Alignment:
Q  199 caaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  9119852 caaatgaggagagttttatattttgaagaaaaataagcc 9119890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 28880011 - 28879979
Alignment:
Q  204 gaggagagttttatattttgaagaaaaataagc 236  Q
    |||||||||||||||||||||||||||||||||    
T  28880011 gaggagagttttatattttgaagaaaaataagc 28879979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 29576188 - 29576236
Alignment:
Q  186 ttttttaattcctcaaacgaggagagttttatattttgaagaaaaataa 234  Q
    ||||||| |||| |||| |||||| ||||||||||||||||||||||||    
T  29576188 ttttttagttccccaaatgaggagcgttttatattttgaagaaaaataa 29576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 46669995 - 46670047
Alignment:
Q  183 caattttttaattcc-tcaaacgaggagagttttatattttgaagaaaaataa 234  Q
    |||||||||| |||| ||||| |||||| ||||||||||||||||||||||||    
T  46669995 caattttttagttccctcaaatgaggagggttttatattttgaagaaaaataa 46670047  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 4442043 - 4442082
Alignment:
Q  196 cctcaaacgaggagagttttatattttgaagaaaaataag 235  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  4442043 cctcaaatgaggagggttttatattttgaagaaaaataag 4442082  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 52430627 - 52430658
Alignment:
Q  204 gaggagagttttatattttgaagaaaaataag 235  Q
    ||||||||||||||||||||||||||||||||    
T  52430627 gaggagagttttatattttgaagaaaaataag 52430658  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 23902492 - 23902532
Alignment:
Q  194 ttcctcaaacgaggagagttttatattttgaagaaaaataa 234  Q
    ||||||||| |||||| |||| |||||||||||||||||||    
T  23902492 ttcctcaaatgaggagggtttcatattttgaagaaaaataa 23902532  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 42650667 - 42650615
Alignment:
Q  183 caattttttaattcctc-aaacgaggagagttttatattttgaagaaaaataa 234  Q
    |||||||||| |||| | ||| |||||| ||||||||||||||||||||||||    
T  42650667 caattttttagttcccccaaatgaggagggttttatattttgaagaaaaataa 42650615  T

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Target: scaffold0471 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 4698 - 4751
Alignment:
Q  185 attttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcct 238  Q
    |||||||| ||||  | |||||||||||||||||||||||||||||||||||||    
T  4698 attttttagttccctatacgaggagagttttatattttgaagaaaaataagcct 4751  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 36106580 - 36106633
Alignment:
Q  185 attttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcct 238  Q
    |||||||| ||||  | |||||||||||||||||||||||||||||||||||||    
T  36106580 attttttagttccctatacgaggagagttttatattttgaagaaaaataagcct 36106633  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 41455287 - 41455233
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    |||||||||| || | |||| |||||| |||||||||||||||||||||||||||    
T  41455287 caattttttagtttcccaaatgaggagggttttatattttgaagaaaaataagcc 41455233  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 27085379 - 27085327
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataag 235  Q
    |||||||||| |||| |||| ||| ||||||||||||||| ||||||||||||    
T  27085379 caattttttagttccccaaatgagaagagttttatattttaaagaaaaataag 27085327  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 5911476 - 5911527
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataa 234  Q
    |||||||||| |||| |||| |||||| |||||||||||| |||||||||||    
T  5911476 caattttttagttccccaaatgaggagggttttatattttaaagaaaaataa 5911527  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 13406458 - 13406399
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||||| |||| |||| |||||  ||||||||||||||||||| ||||||| ||||    
T  13406458 caattttttagttccccaaatgaggattgttttatattttgaagaaatataagcccccca 13406399  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 1839887 - 1839925
Alignment:
Q  199 caaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  1839887 caaatgaggagggttttatattttgaagaaaaataagcc 1839925  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 6537986 - 6537943
Alignment:
Q  186 ttttttaattcctcaaacgaggagagttttatattttgaagaaa 229  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  6537986 ttttttaattctccaaacgaggagagttttatattttgaagaaa 6537943  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 34552137 - 34552188
Alignment:
Q  183 caattttttaattcctcaaacgaggagagttttatattttgaagaaaaataa 234  Q
    |||||||||| ||||||||| |||||| |||||||||||| |||||||||||    
T  34552137 caattttttagttcctcaaatgaggagggttttatattttaaagaaaaataa 34552188  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 35619580 - 35619614
Alignment:
Q  208 agagttttatattttgaagaaaaataagcctccca 242  Q
    |||||||||||||||||||||||||||||||||||    
T  35619580 agagttttatattttgaagaaaaataagcctccca 35619614  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 17556681 - 17556638
Alignment:
Q  199 caaacgaggagagttttatattttgaagaaaaataagcctccca 242  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||    
T  17556681 caaatgaggagggttttatattttgaagaaaaataagcccccca 17556638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 24436982 - 24437037
Alignment:
Q  183 caattttttaattcctc-aaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    ||||||||||| ||| | ||| |||||| |||||||||||||||||||||||||||    
T  24436982 caattttttaactcccccaaatgaggagggttttatattttgaagaaaaataagcc 24437037  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 12625890 - 12625928
Alignment:
Q  199 caaacgaggagagttttatattttgaagaaaaataagcc 237  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  12625890 caaatgaggagatttttatattttgaagaaaaataagcc 12625928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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