View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_49 (Length: 274)
Name: NF19951_low_49
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 3643662 - 3643531
Alignment:
| Q |
2 |
ccaaaaggccgagaaaggtatgaattgaaagtaagtctcgcttcnnnnnnnatatcccacatccactcactttctctcataactcctcgatgtgggactc |
101 |
Q |
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| T |
3643662 |
ccaaaaggccgagaaaggtatgaatttaaagtaagtctcgcttctgtttttatatcccacatccactcactttctctcataactcctcgatgtgggactc |
3643563 |
T |
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| Q |
102 |
agcatcagcttgcttggtagactcttcctaac |
133 |
Q |
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| T |
3643562 |
agcatcagcttgcttggtagtctcttcctaac |
3643531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 3643494 - 3643405
Alignment:
| Q |
170 |
caattcgttgcactcctatgcttgagtagtatccatcatttagagtgcatcaatattcacaagctcgtaatctttttcacatttgtatct |
259 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3643494 |
caatttgttgcactcctatgcttgagtagtatccatcatttagagtgcatcaatattcacaagctcgtaatctttttcacatctgtatct |
3643405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 3461227 - 3461257
Alignment:
| Q |
2 |
ccaaaaggccgagaaaggtatgaattgaaag |
32 |
Q |
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| T |
3461227 |
ccaaaaggccgagaaaggtatgaattgaaag |
3461257 |
T |
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