View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_52 (Length: 271)
Name: NF19951_low_52
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 15529694 - 15529463
Alignment:
| Q |
16 |
atgtaatggatcggtgtacccttttatatttatttgcatacacaaaataaaggagccaaaatgtgtcggctctaacatcaactatgtgtagtgtagctac |
115 |
Q |
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| T |
15529694 |
atgtaatggatcggtgtacccttttatatttatttgcatacacaaaataaaggagccaaaatgtgtcggctctaacatcaactatgtgtagtgtagctac |
15529595 |
T |
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| Q |
116 |
atatatagatgagtaatgaataacaagaactaaatattcaagtacagaattcaaaagaaaaccaaagattaaagtaaacaaacgtttaggaaaatcatca |
215 |
Q |
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| T |
15529594 |
atatatagatgagtaatgaataacaagaacaaaataatgaagtacacaattcagaag------aaagtttaaagtaaacaaatgtttgagaaaatcatca |
15529501 |
T |
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| Q |
216 |
ttcccatttgctcctaatttgatgtgagtgtctataat |
253 |
Q |
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| T |
15529500 |
ttcccatttgctcctaatttgatgtgagtgtctataat |
15529463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 15519954 - 15519724
Alignment:
| Q |
21 |
atggatcggtgtacccttttatatttatttgcatacacaaaataaaggagccaaaatgtgtcggctctaacatcaactatgtgtagtgtagctaca---- |
116 |
Q |
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| T |
15519954 |
atggatcggagtaccctttcatatttacttgcatacacaaaataaaggagccaaaatatgtgggctctaacatcaactat---tagtatacataaatgag |
15519858 |
T |
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| Q |
117 |
---tatatagatgagtaatgaataacaagaactaaatattcaagtacagaattcaaaagaaaaccaaagattaaagtaaacaaacgtttaggaaaatcat |
213 |
Q |
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| T |
15519857 |
ctgtacataatataataatgaataacaagaacaaaatattgaagtgaacaaatcagaag------aaagtttaaagtaaacaaatgtttgagaaaatcat |
15519764 |
T |
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| Q |
214 |
cattcccatttgctcctaatttgatgtgagtgtctataat |
253 |
Q |
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| T |
15519763 |
cattcgcatttgctcctaatttgatgtgagtgtctataat |
15519724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 15523423 - 15523383
Alignment:
| Q |
212 |
atcattcccatttgctcctaatttgatgtgagtgtctataa |
252 |
Q |
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| T |
15523423 |
atcattcccacttgctcttaatttgatgtgagtgtctataa |
15523383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 15547012 - 15546977
Alignment:
| Q |
212 |
atcattcccatttgctcctaatttgatgtgagtgtc |
247 |
Q |
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| T |
15547012 |
atcattcccatttgctcctaatttgatgcgagtgtc |
15546977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 15523548 - 15523503
Alignment:
| Q |
59 |
aaaataaaggagccaaaatgtgtcggctctaacatcaactatgtgtag |
106 |
Q |
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| T |
15523548 |
aaaataaaggggccaaaatgtgccggctctaacatc--ctatgtgtag |
15523503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 15551822 - 15551778
Alignment:
| Q |
205 |
gaaaatcatcattcccatttgctcctaatttgatgtgagtgtcta |
249 |
Q |
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| T |
15551822 |
gaaaataatcaatcccatttactcttaatttgatgtgagtgtcta |
15551778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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