View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_54 (Length: 270)
Name: NF19951_low_54
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 42840212 - 42840445
Alignment:
| Q |
1 |
cacaaaaatgatatgggcatttgaatatccactttgtgtccaaggcaaaattaaataaccataatcatatagctcatgggtcaaaagtcaaaacaaagaa |
100 |
Q |
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| T |
42840212 |
cacaaaaatgatatgggcatttgaatatccactttgtgtccaaggcaaaattaaataaccataatcatatagctcatgggtcaaaagtcaaaacaaagaa |
42840311 |
T |
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| Q |
101 |
gaaaatttactatatattcctgcaattggaagaaggctttccttctggaaaaatatcttgcaatgaaatttcgctataacaccaatttcttcaatcattc |
200 |
Q |
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| T |
42840312 |
gaaaatttactatatattcctgcaattggaagaaggctttccttctggaaaaatatcttacaatgaaatttcgctataacaccaatttcttcaatcattc |
42840411 |
T |
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| Q |
201 |
cggtacttaaatcaaaccaagctagttcattgtc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42840412 |
cggtacttaaatcaaaccaagctagttcattgtc |
42840445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 32643133 - 32643097
Alignment:
| Q |
191 |
tcaatcattccggtacttaaatcaaaccaagctagtt |
227 |
Q |
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| T |
32643133 |
tcaatcatttgggtacttaaatcaaaccaagctagtt |
32643097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 37408171 - 37408219
Alignment:
| Q |
111 |
tatatattcctgcaattggaagaaggctttccttctggaaaaatatctt |
159 |
Q |
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| T |
37408171 |
tatatattcctccaattggaagtaggctttctttgtggaataatatctt |
37408219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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