View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_56 (Length: 265)
Name: NF19951_low_56
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 8420655 - 8420876
Alignment:
| Q |
19 |
gtttacttattagcatgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaa |
118 |
Q |
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| T |
8420655 |
gtttacttattagcatgccttcctaaagataaggaatccacc-tcaactacttcctatagttatagttatgctatgagtga----ctcaattaaaataaa |
8420749 |
T |
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| Q |
119 |
cctagatttcatttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaatt |
218 |
Q |
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| T |
8420750 |
cctagttttcatttctttattattctgattttgttcaaaagggacggttatttgtatatgtatctacctataataattt-------gataacacacaatt |
8420842 |
T |
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| Q |
219 |
aggaagagactgagaacatttcctactctctgct |
252 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8420843 |
aggaagagactgagaacatttcctactctctgct |
8420876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 49171361 - 49171239
Alignment:
| Q |
130 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
229 |
Q |
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| T |
49171361 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
49171262 |
T |
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| Q |
230 |
gagaacatttcctactctctgct |
252 |
Q |
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| T |
49171261 |
gagaacatttcctactctctgct |
49171239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 49171647 - 49171545
Alignment:
| Q |
20 |
tttacttattagcatgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaac |
119 |
Q |
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| T |
49171647 |
tttacttattagcatgccttcctaaagataaggaatccacc-tcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaac |
49171549 |
T |
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| Q |
120 |
ctag |
123 |
Q |
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|||| |
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| T |
49171548 |
ctag |
49171545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 21492543 - 21492315
Alignment:
| Q |
19 |
gtttacttattagcatgccttcctaaagataaggaatccaccc--------tcaactacttcctatagttatagttatgctacgagtgatcgactcaatt |
110 |
Q |
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| T |
21492543 |
gtttacttattagtatgccttcctaaagataaggaatccacctcccatggttcaactacctcctatagttat------gctatgagtgg----ctcaatt |
21492454 |
T |
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| Q |
111 |
aaaataaacctagatttcatttctttattattctga-ttttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataa |
209 |
Q |
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||||||||| ||| |||| |||||||||| |||||| |||||||||||| || ||||| || || |||||| |||||||||||||| ||||||||| |
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| T |
21492453 |
aaaataaacttagttttcttttctttatttttctgatttttgttcaagaggggcggttttt----catatatctagctataataattttcctagggataa |
21492358 |
T |
|
| Q |
210 |
cacacaattaggaagagactgagaacatttcctactctctgct |
252 |
Q |
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|| |||||||||||||||| | ||| ||||||||| |||||| |
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| T |
21492357 |
catacaattaggaagagaccaataacgtttcctactatctgct |
21492315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 45232599 - 45232677
Alignment:
| Q |
107 |
aattaaaataaacctagatttcatttctttattatt-ctgattttgttcaagaaggacggttatttgtatatgtatcta |
184 |
Q |
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|||||||| |||| ||| |||| |||||||||| || |||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
45232599 |
aattaaaacaaacatagttttcttttctttatttttgctgattttgttcaagagggacggttatatatatacgtatcta |
45232677 |
T |
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