View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_57 (Length: 260)
Name: NF19951_low_57
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_57 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 47309760 - 47310014
Alignment:
| Q |
14 |
tctccctcaaatgtgtgtttattgcgatgacgtggaggaaacttgtttacatgcattaagggggtgctacag---tggaaaagtgctattccaaatgaaa |
110 |
Q |
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| T |
47309760 |
tctccctcaaatgtgtgtttattgcgatgacgtggaggaaacttgtttacatgcattaagggggtgctgcagctgtggaaaagtgctattccaaatgaag |
47309859 |
T |
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| Q |
111 |
ataacaatcaattcttta----tgggtaacttggataattggattaatttcaa-tttaaatcatggtgtgggttggagaggaaatggagattggagagat |
205 |
Q |
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| T |
47309860 |
ataacaatcaattctttaattatgggtaacttggataattggattaattttaaatttaaatcatggtgttggttggagaggaaatggagattggagagat |
47309959 |
T |
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| Q |
206 |
atttggggttaacttgtcattgtttgtggacgtggaggaataaggagttgcatga |
260 |
Q |
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| T |
47309960 |
atttggggatagctcgtcattgtttgtggacgtggagcaataaggagttgcatga |
47310014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 21310434 - 21310323
Alignment:
| Q |
150 |
ttaatttcaatttaaatcatggtgtgggttggagaggaaatggagattggagagatatttggggt-taacttgtcattgtttgtggacgtggaggaataa |
248 |
Q |
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| T |
21310434 |
ttaatctcaatttaagccatgatgctggttggaggggggatagagattggaaagatatttgggcaataacatgccattgtttgtggacatggaggaatta |
21310335 |
T |
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| Q |
249 |
ggagttgcatga |
260 |
Q |
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| T |
21310334 |
ggagttgcatga |
21310323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 50564444 - 50564517
Alignment:
| Q |
188 |
aatggagattggagagatatttggg-gttaacttgtcattgtttgtggacgtggaggaataaggagttgcatga |
260 |
Q |
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| T |
50564444 |
aatggagattggaaagatatttgggcgacaacatgccattgtttgtcgacatggaggaataaggagttgcatga |
50564517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 45089347 - 45089307
Alignment:
| Q |
220 |
tgtcattgtttgtggacgtggaggaataaggagttgcatga |
260 |
Q |
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| T |
45089347 |
tgtcattgtttatgaacgtggaggaataaggagttgcatga |
45089307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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