View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_6 (Length: 643)
Name: NF19951_low_6
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 332 - 638
Target Start/End: Original strand, 34356797 - 34357103
Alignment:
| Q |
332 |
tatcatttatcatttctattcattccttcttccttttcnnnnnnncgtagaatctatttattcgttctataacaatcaatttggtcaaccttaaatattt |
431 |
Q |
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| T |
34356797 |
tatcatttatcatttctattcattccttcttccttttctttttttcgtagaatctatttattcgttctataacaatcaatttggtcaaccttaaatattt |
34356896 |
T |
|
| Q |
432 |
aaaaccatggctcccacactaccttaattctgtcaaaatattttttcacacgcaaagccaaatttatttcattcactataatttaaggtaatcataagtt |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34356897 |
aaaaccatggctcccacactaccttaattctgtcaaaatattttttcacacgcaaagccaaatttatttcattcactgtaatttaaggtaatcataagtt |
34356996 |
T |
|
| Q |
532 |
ctataaattgaaatttctatggaaccaattttattccatgcaaaacaattactagtatatatcaataagaagaaaacaaaaatactcattcataaattca |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356997 |
ctataaattgaaatttctatggaaccaattttattccatgcaaaacaattactagtatatatcaataagaagaaaacaaaaatactcattcataaattca |
34357096 |
T |
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| Q |
632 |
tctcact |
638 |
Q |
| |
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| ||||| |
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| T |
34357097 |
tatcact |
34357103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 34356195 - 34356493
Alignment:
| Q |
16 |
cagagagacattcatttactataaatgaccaaaactcaatgnnnnnnntatgattataaccaaaacgatcaatgcaagatcgaagtctctactcaactac |
115 |
Q |
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| T |
34356195 |
cagagagacattcatttactataaatgaccaaaactcaatgaaaaaaatatgattataaccaaaacgatcaatgcaagatcgaagtctctactcaactac |
34356294 |
T |
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| Q |
116 |
actgccactctcaacttgaagaacatttcatctgaaaaaagaaagaaacaactaattaataattacattnnnnnnnnnnnnnnnnggtgcactaaattaa |
215 |
Q |
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| T |
34356295 |
actgccactctcaacttgaagaacatttcatctgaaaaaagaaagaaacaactaattaataattacatt----cacacacacacaggtgcactaaattaa |
34356390 |
T |
|
| Q |
216 |
ttaagaatataattcagtcttggagggcatgcagacctttgtccatataattaacaagtgaagacaaatgcataatcaatgtttttccatttgttaatta |
315 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34356391 |
ttaagaatataattcagtgttggaggacatgcagacctttgtccatataattaacaagtgaaggcaaatgcataatcaatgtttttccatttgttaatta |
34356490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 580
Target Start/End: Original strand, 4225290 - 4225320
Alignment:
| Q |
550 |
atggaaccaattttattccatgcaaaacaat |
580 |
Q |
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| T |
4225290 |
atggaaccaattttattccatgcaaaacaat |
4225320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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