View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_60 (Length: 252)
Name: NF19951_low_60
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_60 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 16529584 - 16529823
Alignment:
| Q |
1 |
caagcatgtacgaagatcctacatcattttcagtcacttcaatgaagaacatatatcaatgataatattcttcttggaaatactnnnnnnnngaaaatct |
100 |
Q |
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| T |
16529584 |
caagcatgaacgaagatcctacagcattttcagtcacttcaatgaagaacatatatcaatgataatattcttcttggaaatactaaaaaaaagaaaatct |
16529683 |
T |
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| Q |
101 |
taccaacataaccagcataataacttatatcagcttcttcttttgcaacattgaaatcccttacctgaacataagagtttcattattgaggagtatatta |
200 |
Q |
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| T |
16529684 |
taccaacataaccagcataataacttatatcagcttcttcttttgcaacgttgaaatcccttacctgaacataagagtttcattattgaggagtatatta |
16529783 |
T |
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| Q |
201 |
tgtgcattaatcattttatcacagtagatcataccagtat |
240 |
Q |
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| T |
16529784 |
tgtgcattaatcattttatcacagtagatcataccagtat |
16529823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 16589685 - 16589779
Alignment:
| Q |
96 |
aatcttaccaacataaccagcataataacttatatcagcttcttcttttgcaacattgaaatcccttacctgaacataagagtttcattattgag |
190 |
Q |
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| T |
16589685 |
aatcttaccaatataaccagcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgag |
16589779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 409 - 642
Alignment:
| Q |
1 |
caagcatgtacgaagatcctacatcattttcagtcacttcaatgaagaacatatatcaatgataatattcttcttggaaatactnnnnnnnngaaaatct |
100 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
409 |
caagcatgaacgaagatcctacagcattttcagtcacttcaatgaagaacatatatcaatgataatattcttcttggaaatactaaaaaaaagaaattct |
508 |
T |
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| Q |
101 |
taccaacataaccagcataataacttatatcagcttcttcttttgcaacattgaaatcccttacctgaacataagagtttcattattgaggagtatatta |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||| |||| | ||||| |
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| T |
509 |
taccaacataaccagcgtaataacttatatcagcttcttcttttgcaacgttgaaatcccttacctgaaaata----ttgcattattaaggattgtatta |
604 |
T |
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| Q |
201 |
-tgtgcattaatcattttatcacagtagatcataccag |
237 |
Q |
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||||||||||| | ||||||||| || | |||||||| |
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| T |
605 |
ttgtgcattaataagtttatcacattacaccataccag |
642 |
T |
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