View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_63 (Length: 249)

Name: NF19951_low_63
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_63
NF19951_low_63
[»] chr6 (12 HSPs)
chr6 (1-177)||(3003525-3003704)
chr6 (1-188)||(2929456-2929646)
chr6 (3-188)||(2974154-2974342)
chr6 (6-182)||(2952086-2952265)
chr6 (1-195)||(2964649-2964846)
chr6 (1-182)||(2927313-2927497)
chr6 (1-195)||(2937600-2937797)
chr6 (9-176)||(2997122-2997292)
chr6 (1-175)||(2934759-2934936)
chr6 (1-192)||(2658726-2658926)
chr6 (34-174)||(2978408-2978550)
chr6 (1-174)||(2983024-2983203)
[»] chr7 (1 HSPs)
chr7 (1-173)||(3339187-3339362)
[»] scaffold0024 (3 HSPs)
scaffold0024 (1-232)||(34983-35217)
scaffold0024 (129-174)||(45123-45168)
scaffold0024 (72-120)||(44743-44791)
[»] chr3 (2 HSPs)
chr3 (6-191)||(49613580-49613768)
chr3 (26-170)||(49618589-49618735)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 3003525 - 3003704
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||   |||| ||||||||||||||||||||||||||||||||||||    
T  3003525 tcatcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccg 3003624  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactc 177  Q
    |||||||| | |||||||||   | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3003625 aaaacctcaagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactc 3003704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 2929646 - 2929456
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||  |||||  ||||||||||||||||||||||||||| |    
T  2929646 tcatgagggtaatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctg 2929547  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtat 188  Q
    |||||||  | |||||||||   | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2929546 aaaaccttaagtcaagtaaacacttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtat 2929456  T

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Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 2974342 - 2974154
Alignment:
Q  3 ataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaa 102  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||  |||||| |||||   ||||  |||||||||||||||||||||||||||||||    
T  2974342 ataagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaa 2974243  T
Q  103 aacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtat 188  Q
    |||||| | ||| |||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  2974242 aacctcaagtcatgtaaacattcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtat 2974154  T

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Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 2952265 - 2952086
Alignment:
Q  6 agggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaac 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||   ||||  ||||  ||||||||||||||||||||||||| ||||||||    
T  2952265 agggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactccttccgaaaac 2952166  T
Q  106 ctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtag 182  Q
    ||| | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2952165 ctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtag 2952086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 2964846 - 2964649
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||||||||||| |||||||||||||||||| |||||||||||| | |  |||||| |||||   | ||| |||||||||||||||||||||||||||||    
T  2964846 tcataagggtaacgacactgctccaaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccg 2964747  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcatctgt 195  Q
    |||||||| | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  2964746 aaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatctgt 2964649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 2927497 - 2927313
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||||||| ||| ||   ||||  ||||  |||||||||||||||||||||||||||||    
T  2927497 tcatcagggtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccg 2927398  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtag 182  Q
    |||||||| | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2927397 aaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtag 2927313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 2937797 - 2937600
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| |||||||| ||| |||  ||||||   |||| |||||  ||||||||||||||||||||||||||| |    
T  2937797 tcatgagggtaatgacactgctccaaagcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctg 2937698  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcatctgt 195  Q
    |||| ||| | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  2937697 aaaatctcaagtcaagtaaacaattactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgt 2937600  T

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Target: chr6; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 2997122 - 2997292
Alignment:
Q  9 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 108  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||| | |||| |||| | |||   |||||||||||||||| ||||||||||||||    
T  2997122 gtaatgaaactgctccaaagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctc 2997221  T
Q  109 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcact 176  Q
     | |||||||||   |  |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2997222 aagtcaagtaaacacttgcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcact 2997292  T

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Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 2934936 - 2934759
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| |||||| |||||  ||  ||| || | |||  ||||   |||||||||||||||||||||||||||||    
T  2934936 tcatcagggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccg 2934837  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcac 175  Q
    |||||||| | |||||||||   | ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  2934836 aaaacctcaagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcac 2934759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 2658726 - 2658926
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||| |||  ||| || | |||  ||||   ||||||||||||||||||||||||||| |    
T  2658726 tcataagggtaatgacattgctccaaagcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctg 2658825  T
Q  101 a------aaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcat 191  Q
    |      ||||||| | |||||||||   | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  2658826 attttgaaaacctcaagtcaagtaaacacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcat 2658925  T
Q  192 c 192  Q
    |    
T  2658926 c 2658926  T

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Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 2978550 - 2978408
Alignment:
Q  34 atattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa---tcactttcag 130  Q
    |||| |||||| |||  |||||| |||||| |||||  ||||||||||||||||||||||||||||||||||||| | |||||||||   ||||||| ||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  131 tgttcactttaaacctaactccagcttctaacaactcagttgca 174  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  2978450 tgttcactttaaacctaa-tccagcttctaacaattcagttgca 2978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 2983203 - 2983024
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtg---ccatccccaactaataattgaggaatttcaagaactcctc 97  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||  ||||||    | |||   ||||| ||||||||||||||||||||||||||    
T  2983203 tcatgagggtaatgacaatgctccaaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctc 2983104  T
Q  98 ccgaaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgca 174  Q
    ||||||||||| | |||  ||||   | ||||| ||| ||||||| |||||||||||||||||||| ||||| |||||||    
T  2983103 ccgaaaacctcaagtcatataaacacttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgca 2983024  T

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Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 3339362 - 3339187
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||  |||||| |||||  |||||  |||||||||||||||||||||||||||||    
T  3339362 tcatcagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccg 3339263  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgc 173  Q
    |||||||| |  ||||||||   ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  3339262 aaaacctcaagccaagtaaacactcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc 3339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34983 - 35217
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||  |||||| |||||| |||||  |||| ||||||||||||| |||||| |||    
T  34983 tcataagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccg 35082  T
Q  101 aaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcatctgtag 197  Q
    |||||| | | |||||||||   ||||||| ||  ||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||      
T  35083 aaaaccccaagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttc 35182  T
Q  198 gccgaactggtatctacgcgtctgactttcaatag 232  Q
    | ||| || || |||||  | ||||||||||||||    
T  35183 gtcgatcttgtctctacttggctgactttcaatag 35217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 45123 - 45168
Alignment:
Q  129 agtgttcactttaaacctaactccagcttctaacaactcagttgca 174  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||    
T  45123 agtggtcacttgaaacctaactccagcttctaacaactcatttgca 45168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 44743 - 44791
Alignment:
Q  72 taattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa 120  Q
    ||||||||||||||||||||||| | | ||||||||| | |||||||||    
T  44743 taattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaa 44791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 49613768 - 49613580
Alignment:
Q  6 agggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaac 105  Q
    |||||| ||||| ||||||||||||| |||||||||||| |||  ||| || | |||| |||||   |||||||||||||||||||| | ||| ||||||    
T  49613768 agggtagtgacattgctccaaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaac 49613669  T
Q  106 ctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcat 191  Q
    ||| | |||||||||   ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||| ||||    
T  49613668 ctcaaatcaagtaaacactcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttcat 49613580  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 49618735 - 49618589
Alignment:
Q  26 aagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaatc--- 122  Q
    |||||| |||||||| |||||||| | |||| |  ||| |||||  ||||||||||||||||||||||| ||| ||||||||| | |||||||||         
T  49618735 aagcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaacatgt 49618637  T
Q  123 actttcagtgttcactttaaacctaactccagcttctaacaactcagt 170  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  49618636 agttttagtgttcactttaaacctaactccagcttctaacaactcagt 49618589  T

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