View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_65 (Length: 246)
Name: NF19951_low_65
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 13813417 - 13813640
Alignment:
| Q |
17 |
aggattttctagttaacctcagcctaaagcgtttagcatacataaatcttcaagatttgaaggccttaaatatgttaccccaacggttctttggtctagt |
116 |
Q |
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| T |
13813417 |
aggattttctagttaacctcagtcaaaagcgtttagcatacataaatcttcaagatttgaaggccttaaatatattaccccaacggttctttggtctagt |
13813516 |
T |
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| Q |
117 |
cttaggataattgacaaccattattccaccataactataagctgcatctttgctattgataactgtctcttcc---ttgtactgatattggttagcttga |
213 |
Q |
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| T |
13813517 |
cttaggataattgacaaccataataccaccataactataagctgcatctttgctattgataactgtctcttccttgttgtactgatattgattagcttga |
13813616 |
T |
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| Q |
214 |
aaccccttacgaccctgtctctgc |
237 |
Q |
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||||||||||||||||||| |||| |
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| T |
13813617 |
aaccccttacgaccctgtccctgc |
13813640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 13825964 - 13826183
Alignment:
| Q |
20 |
attttctagttaacctcagcctaaagcgtttagcata-cataaatcttcaagatttgaaggccttaaatatgttaccccaacggttctttggtctagtct |
118 |
Q |
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||||||||||||||||||| | ||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13825964 |
attttctagttaacctcagtccaaagcgtg--gtataacataaatcttcaagatttgaaggccttaaatatattaccccaacggttctttggtctagtct |
13826061 |
T |
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| Q |
119 |
taggataattgacaaccattattccaccataactataagctgcatctttgctattgataactgtctcttcc---ttgtactgatattggttagcttgaaa |
215 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
13826062 |
taggataattgacaaccataataccaccataactataagctgcatctttgctattgataactgtctcttccttgttgtactgatattgattagcttgaaa |
13826161 |
T |
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| Q |
216 |
ccccttacgaccctgtctctgc |
237 |
Q |
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||||||||||||||||| |||| |
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| T |
13826162 |
ccccttacgaccctgtccctgc |
13826183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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