View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_68 (Length: 242)
Name: NF19951_low_68
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 34835646 - 34835441
Alignment:
| Q |
23 |
ttatagatgggcttctgtaagtacatttcatgctttacacnnnnnnncttcaatttattaagatcaagatgatttcaattgattcatttgttgaacagat |
122 |
Q |
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| T |
34835646 |
ttatagatgggcttctgtaagtacatttcatgctttacactttttttcttcaatttattaagatcaagatgatttcaattgattcatttgttgaacagat |
34835547 |
T |
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| Q |
123 |
gcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaataacggtccacgacgtccaggtgat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
34835546 |
gcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaataacggtccacggcgtccgggtgat |
34835447 |
T |
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| Q |
223 |
attctt |
228 |
Q |
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|||||| |
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| T |
34835446 |
attctt |
34835441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 34821404 - 34821372
Alignment:
| Q |
23 |
ttatagatgggcttctgtaagtacatttcatgc |
55 |
Q |
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| T |
34821404 |
ttatagatgggcttctgtaagtacacttcatgc |
34821372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 35336285 - 35336366
Alignment:
| Q |
113 |
ttgaacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaat |
194 |
Q |
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||||||||||||| | |||||||||| || ||||||||| || ||||| ||||||||||||||||| ||||||||||| |
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| T |
35336285 |
ttgaacagatgcaaaatgagggagatgccctgagaacagaatcacagctgcttagtacatttgattatgcatggaacacaat |
35336366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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