View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_72 (Length: 237)
Name: NF19951_low_72
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_72 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 16529591 - 16529371
Alignment:
| Q |
2 |
catgcttggaagatgtttgacgtctgtactatggggaatggtttcagatcgctatggtcgaaaacctgttataatcatgggaatcattgcagtgtaagta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16529591 |
catgcttggaagatgtttgacgtctgtactatggggaatggtttcagatcgctatggtcgaaaacctgttataatcatgggaatcattgcagtgtaagta |
16529492 |
T |
|
| Q |
102 |
gtatccaacaaatgaatattgaaatgggtgttttctttaaatcatgttgtgtgatttcgctcataatcattgatgttaacttgatttcagtgtcattttc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16529491 |
gtatccaacaaatgaatattgaaatgggtgttttctttaaatcatgttttgtgatttcgctcataatcattgatgttaacttgatttcagtgtcattttc |
16529392 |
T |
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| Q |
202 |
aacacattatttggccttagt |
222 |
Q |
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||||||||||||||||||||| |
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| T |
16529391 |
aacacattatttggccttagt |
16529371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16589595 - 16589378
Alignment:
| Q |
1 |
acatgcttggaagatgtttgacgtctgtactatggggaatggtttcagatcgctatggtcgaaaacctgttataatcatgggaatcattgcagtgtaagt |
100 |
Q |
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||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| || || ||||||||||| |
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| T |
16589595 |
acatgcttggaagatgtttcacagctgtattatggggaatggtttcagatcgctatggtcgaaaacctgtattaataatggggattatcgcagtgtaagt |
16589496 |
T |
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| Q |
101 |
agtatccaacaaatgaatattgaaatgggtgttttctttaaatcatgttgtgtgatttcgctcataatcattgatg-ttaacttgatttcagtgtcattt |
199 |
Q |
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| T |
16589495 |
agtatctaa-----taacaatgaatgcgattctttctttaagttatgttgtgtgatttctcccacaattgttcatgttttacttgatttcagtgtcattt |
16589401 |
T |
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| Q |
200 |
tcaacacattatttggccttagt |
222 |
Q |
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||||||||||||| ||||||||| |
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| T |
16589400 |
tcaacacattattcggccttagt |
16589378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 16521090 - 16521034
Alignment:
| Q |
18 |
ttgacgtctgtactatggggaatggtttcagatcgctatggtcgaaaacctgttata |
74 |
Q |
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||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16521090 |
ttgacatctgtattatggggaatggtttctgatcgctatggtcgaaaacctgttata |
16521034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 26370824 - 26370783
Alignment:
| Q |
180 |
acttgatttcagtgtcattttcaacacattatttggccttag |
221 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
26370824 |
actttatttcagtatcattttcaacacactatttggccttag |
26370783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 416 - 201
Alignment:
| Q |
2 |
catgcttggaagatgtttgacgtctgtactatggggaatggtttcagatcgctatggtcgaaaacctgttataatcatgggaatcattgcagtgtaagta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
416 |
catgcttggaagatgtttgacgtctgtactatggggaatggtttcagatcgctatggtcgaaaacctgttataatcatgggaatcattgcagtgtaagta |
317 |
T |
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| Q |
102 |
gtatccaacaaatgaatattgaaatgggtgttttctttaaatcatgttgtgtgatttcgctcataatcattgatgttaacttgatttcagtgtcattttc |
201 |
Q |
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||||| |||||| |||||||||||||| || ||||||||| | |||||||| ||| || |||||||| ||||||||| |||||||||||||||||||||| |
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| T |
316 |
gtatctaacaaaagaatattgaaatggatg-tttctttaagttatgttgtgggatgtctctcataattattgatgtttacttgatttcagtgtcattttc |
218 |
T |
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| Q |
202 |
aacacattatttggcct |
218 |
Q |
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||||||||||||||||| |
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| T |
217 |
aacacattatttggcct |
201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 2606521 - 2606562
Alignment:
| Q |
180 |
acttgatttcagtgtcattttcaacacattatttggccttag |
221 |
Q |
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||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
2606521 |
acttgatttcagtatcatcttcaacacactatttggccttag |
2606562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 39160887 - 39160927
Alignment:
| Q |
181 |
cttgatttcagtgtcattttcaacacattatttggccttag |
221 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||| |
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| T |
39160887 |
cttgatttcagtgtcattttcaacacgttttttggtcttag |
39160927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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